Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1105 GTGCGGGACGAGATAGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAATTTGATGCTTTGCCGGGAGGTGTGGCTTCCAACAGCACAACTGCTATCGTTCCCCATCTTCGTCGACTTAGTTCCACCAGGAGTGGCAGTGTGGTGACCAGCAACCTTTTGGATGATAATGACATAGAGGACCTGGAGATGTTGCTCGAGGCATACTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATCGACGACACCGAGGATTATGTTAATATTCAACTTGACAACCAAAGAAATGAACTCATTCAGTTTCAGTTAACCCTGACAATTGCTTCATTTGCCATAGCGGTTGAAACCTTAATCGCCGGGTTGTTTGGTATGAACATCCCTTGTACATTGTACGAGACGGATGGGGTGTTTGGGTACTTTGTCGGAGGTACTTCAGCAGGCTGTTTATTGCTTTTCCTGCTTATTTTTGGCTTCGAAGATCTTCGTTCTTCAATCGCCACAAAGGAAAAGGATTTTTTCATATTTCTTACTATGGCAAATTCTAAAGGGTCATCCAACGTCAGAAGTTTTATGAGTTCTGGGAAACATGCACTACTCCCTCCTAAAAGTCCCTTTCCTAGTGTTTCTCCATCATATACGGAATATGTTCCTAATAGTGTAATAGGAGCAAAAGCTGTTCAGAGACCAAGAGATGGTAACAGCTACCATCAAAGAACTTCTTCCGAAAGTATTTTAATAGAGGAGCAGCCTTCTTGGCTTGATGATCTCCTCAATGAGCCAGAGACCCCTGTTCGCAGAGTTGGTCATCGACGTTCGTCGAGTGACTCCTTTGCATATACAGATGCTGCTAATGTAAATTTTGATAGTATCATGCAAGAAGAATTTAGATATGCAAATGCAATTCCTGGACACTCTTGGTTATCTCAAGAATTTGATCATCAGAGAGATGCAAGGCATGTTTCATTCTATACTGAAGCGAATATAGCAAAACAGAAGAATAGGGTGTGGGAGTCGTCTTTATCTACCATGAATAATCCCATTGCCCTTCATTCTCCTAGGGAAAACATTGGTATTCATACCTCAGGGCCACTAAACACGCCACAGGAAGCAGATGGTTTGCCTTCTACGGCAAGTGAGAAACAGGATTCAACTGAGTCTGGTTCACACGATCCAAAAGTCTCTTCTGACAGGAAAGATGCTTCTCATGGAAAATCATCTGTGTCTGATACAGAAAATAAACGCGCAAAACAGCAATTTGCTCAGCGTTCAAGGGTTCGGAAACTTCAATATATAGCAGAGCTTGAAAGGAAAGTACAAGCTTTGCAGGCAGAGGGCTCTGAAGTCTCAGCTGAGCTTGAATTTCTCAACCAACAAAATCTTATTCTTAGCATGGAAAACAAAGCCCTCAAGCAGCGGTTAGAGAATTTAGCTCAAGAGCAGCTAATTAAATACTTGGAGCAGGAAGTACTGGAGAGGGAGATTGGAAGGTTAAGAACTGTGCACCAGCAGCAACATCATCAGCAGCAGCAACCACAACAGCTACGGCCTTCTTCTAGTCATCGGCGTACTTCGAGCAAAGACCTTGACAATCAATTTGCTAACCTTTCTTTGAAGCAAAAGGATTCTGGTTCAAGTCGTGACCCGGTAACAGGTCCAGTGCGCAACGCCGCTGATCTCTTCCAGTCTTGGTACTGTACCTGTCTGTCTCTTTCTCTCCTCTCTGCCCTTTTAATTCTTTGCTGCTGTTTCCTGCCTTTTCTGGAGTTAACATCTTCATATGAATTGAATGCACCTGGTGGTCATTGCCGTTGTATTGTTTGTTCTACATGGGTTGTGTGGCCTACCGGAGGTGGTATCTTACCTGTAATGCATCATGGTGAGAAATAA 1944 43.06 VRDEIEHLLDDNEDMAQLYLTRKWMQNQQFDALPGGVASNSTTAIVPHLRRLSSTRSGSVVTSNLLDDNDIEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLIAGLFGMNIPCTLYETDGVFGYFVGGTSAGCLLLFLLIFGFEDLRSSIATKEKDFFIFLTMANSKGSSNVRSFMSSGKHALLPPKSPFPSVSPSYTEYVPNSVIGAKAVQRPRDGNSYHQRTSSESILIEEQPSWLDDLLNEPETPVRRVGHRRSSSDSFAYTDAANVNFDSIMQEEFRYANAIPGHSWLSQEFDHQRDARHVSFYTEANIAKQKNRVWESSLSTMNNPIALHSPRENIGIHTSGPLNTPQEADGLPSTASEKQDSTESGSHDPKVSSDRKDASHGKSSVSDTENKRAKQQFAQRSRVRKLQYIAELERKVQALQAEGSEVSAELEFLNQQNLILSMENKALKQRLENLAQEQLIKYLEQEVLEREIGRLRTVHQQQHHQQQQPQQLRPSSSHRRTSSKDLDNQFANLSLKQKDSGSSRDPVTGPVRNAADLFQSWYCTCLSLSLLSALLILCCCFLPFLELTSSYELNAPGGHCRCIVCSTWVVWPTGGGILPVMHHGEK 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9982023 9999130 - ClG42_05g0110500.10 Clacu05g1105 248852

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1105 647 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 205 557 IPR044797 -
Clacu05g1105 647 Gene3D Magnesium transport protein CorA, transmembrane region 1 117 - -
Clacu05g1105 647 MobiDBLite consensus disorder prediction 371 441 - -
Clacu05g1105 647 MobiDBLite consensus disorder prediction 377 401 - -
Clacu05g1105 647 MobiDBLite consensus disorder prediction 402 437 - -
Clacu05g1105 647 Gene3D - 430 484 - -
Clacu05g1105 647 Coils Coil 443 498 - -
Clacu05g1105 647 CDD bZIP_plant_RF2 432 478 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g1105 647 SMART brlzneu 428 487 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g1105 647 SUPERFAMILY Leucine zipper domain 439 481 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g1105 647 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 122 173 IPR045863 -
Clacu05g1105 647 CDD Mrs2_Mfm1p-like 1 167 IPR039204 -
Clacu05g1105 647 Pfam CorA-like Mg2+ transporter protein 73 175 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Clacu05g1105 647 MobiDBLite consensus disorder prediction 519 544 - -
Clacu05g1105 647 MobiDBLite consensus disorder prediction 520 538 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1105 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1105 Clacu-Chr5:9982023 Clacu11g1535 Clacu-Chr11:26482957 2.00E-98 dispersed
Clacu05g1105 Clacu-Chr5:9982023 Clacu07g0056 Clacu-Chr7:921929 3.50E-34 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu10g1283 . 1 447 MRS2 Gene Family AT1G16010 85.2 4.0e-207 717.6
Clacu08g1201 . 6 380 MRS2 Gene Family AT1G16010 52.4 2.1e-107 386.3
Clacu06g0654 . 1 359 MRS2 Gene Family AT5G64560 79.9 1.6e-156 549.3
Clacu07g0056 . 780 1151 MRS2 Gene Family AT5G64560 69.2 6.2e-132 467.6
Clacu02g0739 . 14 495 MRS2 Gene Family AT3G19640 64.4 3.0e-155 545.4
Clacu02g0026 . 59 386 MRS2 Gene Family AT3G58970 69.9 4.2e-116 415.2
Clacu05g1105 . 1 177 MRS2 Gene Family AT3G58970 71.3 8.3e-64 241.5
Clacu08g1201 . 6 380 MRS2 Gene Family AT2G03620 68.4 4.1e-137 485.0
Clacu10g1283 . 13 447 MRS2 Gene Family AT2G03620 53.0 1.2e-112 403.7
Clacu06g0654 . 1 321 MRS2 Gene Family AT5G09690 77.2 1.0e-127 453.4
Clacu07g0056 . 780 1113 MRS2 Gene Family AT5G09690 64.2 1.1e-108 390.2
Clacu10g1283 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.7e-78 288.1
Clacu06g0654 . 23 281 MRS2 Gene Family AT5G09720 69.1 7.2e-88 320.9
Clacu07g0056 . 815 1073 MRS2 Gene Family AT5G09720 62.0 2.2e-76 282.7
Clacu10g1283 . 1 447 MRS2 Gene Family AT1G80900 83.2 7.3e-201 696.8
Clacu08g1201 . 6 380 MRS2 Gene Family AT1G80900 54.2 4.0e-106 382.1
Clacu01g1466 . 16 424 MRS2 Gene Family AT5G22830 68.4 8.5e-144 507.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003183 1 1 2 1 1 2 3 2 1 2 2 2 2 2 2 1 1 2 2 1 2 2 1 2 2 2 1 3 2 1 51