Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1105 GTGCGGGACGAGATAGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAATTTGATGCTTTGCCGGGAGGTGTGGCTTCCAACAGCACAACTGCTATCGTTCCCCATCTTCGTCGACTTAGTTCCACCAGGAGTGGCAGTGTGGTGACCAGCAACCTTTTGGATGATAATGACATAGAGGACCTGGAGATGTTGCTCGAGGCATACTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATCGACGACACCGAGGATTATGTTAATATTCAACTTGACAACCAAAGAAATGAACTCATTCAGTTTCAGTTAACCCTGACAATTGCTTCATTTGCCATAGCGGTTGAAACCTTAATCGCCGGGTTGTTTGGTATGAACATCCCTTGTACATTGTACGAGACGGATGGGGTGTTTGGGTACTTTGTCGGAGGTACTTCAGCAGGCTGTTTATTGCTTTTCCTGCTTATTTTTGGCTTCGAAGATCTTCGTTCTTCAATCGCCACAAAGGAAAAGGATTTTTTCATATTTCTTACTATGGCAAATTCTAAAGGGTCATCCAACGTCAGAAGTTTTATGAGTTCTGGGAAACATGCACTACTCCCTCCTAAAAGTCCCTTTCCTAGTGTTTCTCCATCATATACGGAATATGTTCCTAATAGTGTAATAGGAGCAAAAGCTGTTCAGAGACCAAGAGATGGTAACAGCTACCATCAAAGAACTTCTTCCGAAAGTATTTTAATAGAGGAGCAGCCTTCTTGGCTTGATGATCTCCTCAATGAGCCAGAGACCCCTGTTCGCAGAGTTGGTCATCGACGTTCGTCGAGTGACTCCTTTGCATATACAGATGCTGCTAATGTAAATTTTGATAGTATCATGCAAGAAGAATTTAGATATGCAAATGCAATTCCTGGACACTCTTGGTTATCTCAAGAATTTGATCATCAGAGAGATGCAAGGCATGTTTCATTCTATACTGAAGCGAATATAGCAAAACAGAAGAATAGGGTGTGGGAGTCGTCTTTATCTACCATGAATAATCCCATTGCCCTTCATTCTCCTAGGGAAAACATTGGTATTCATACCTCAGGGCCACTAAACACGCCACAGGAAGCAGATGGTTTGCCTTCTACGGCAAGTGAGAAACAGGATTCAACTGAGTCTGGTTCACACGATCCAAAAGTCTCTTCTGACAGGAAAGATGCTTCTCATGGAAAATCATCTGTGTCTGATACAGAAAATAAACGCGCAAAACAGCAATTTGCTCAGCGTTCAAGGGTTCGGAAACTTCAATATATAGCAGAGCTTGAAAGGAAAGTACAAGCTTTGCAGGCAGAGGGCTCTGAAGTCTCAGCTGAGCTTGAATTTCTCAACCAACAAAATCTTATTCTTAGCATGGAAAACAAAGCCCTCAAGCAGCGGTTAGAGAATTTAGCTCAAGAGCAGCTAATTAAATACTTGGAGCAGGAAGTACTGGAGAGGGAGATTGGAAGGTTAAGAACTGTGCACCAGCAGCAACATCATCAGCAGCAGCAACCACAACAGCTACGGCCTTCTTCTAGTCATCGGCGTACTTCGAGCAAAGACCTTGACAATCAATTTGCTAACCTTTCTTTGAAGCAAAAGGATTCTGGTTCAAGTCGTGACCCGGTAACAGGTCCAGTGCGCAACGCCGCTGATCTCTTCCAGTCTTGGTACTGTACCTGTCTGTCTCTTTCTCTCCTCTCTGCCCTTTTAATTCTTTGCTGCTGTTTCCTGCCTTTTCTGGAGTTAACATCTTCATATGAATTGAATGCACCTGGTGGTCATTGCCGTTGTATTGTTTGTTCTACATGGGTTGTGTGGCCTACCGGAGGTGGTATCTTACCTGTAATGCATCATGGTGAGAAATAA 1944 43.06 VRDEIEHLLDDNEDMAQLYLTRKWMQNQQFDALPGGVASNSTTAIVPHLRRLSSTRSGSVVTSNLLDDNDIEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLIAGLFGMNIPCTLYETDGVFGYFVGGTSAGCLLLFLLIFGFEDLRSSIATKEKDFFIFLTMANSKGSSNVRSFMSSGKHALLPPKSPFPSVSPSYTEYVPNSVIGAKAVQRPRDGNSYHQRTSSESILIEEQPSWLDDLLNEPETPVRRVGHRRSSSDSFAYTDAANVNFDSIMQEEFRYANAIPGHSWLSQEFDHQRDARHVSFYTEANIAKQKNRVWESSLSTMNNPIALHSPRENIGIHTSGPLNTPQEADGLPSTASEKQDSTESGSHDPKVSSDRKDASHGKSSVSDTENKRAKQQFAQRSRVRKLQYIAELERKVQALQAEGSEVSAELEFLNQQNLILSMENKALKQRLENLAQEQLIKYLEQEVLEREIGRLRTVHQQQHHQQQQPQQLRPSSSHRRTSSKDLDNQFANLSLKQKDSGSSRDPVTGPVRNAADLFQSWYCTCLSLSLLSALLILCCCFLPFLELTSSYELNAPGGHCRCIVCSTWVVWPTGGGILPVMHHGEK 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9982023 9999130 - ClG42_05g0110500.10 Clacu05g1105 248852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1105 647 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 205 557 IPR044797 -
Clacu05g1105 647 Gene3D Magnesium transport protein CorA, transmembrane region 1 117 - -
Clacu05g1105 647 MobiDBLite consensus disorder prediction 371 441 - -
Clacu05g1105 647 MobiDBLite consensus disorder prediction 377 401 - -
Clacu05g1105 647 MobiDBLite consensus disorder prediction 402 437 - -
Clacu05g1105 647 Gene3D - 430 484 - -
Clacu05g1105 647 Coils Coil 443 498 - -
Clacu05g1105 647 CDD bZIP_plant_RF2 432 478 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g1105 647 SMART brlzneu 428 487 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g1105 647 SUPERFAMILY Leucine zipper domain 439 481 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g1105 647 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 122 173 IPR045863 -
Clacu05g1105 647 CDD Mrs2_Mfm1p-like 1 167 IPR039204 -
Clacu05g1105 647 Pfam CorA-like Mg2+ transporter protein 73 175 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Clacu05g1105 647 MobiDBLite consensus disorder prediction 519 544 - -
Clacu05g1105 647 MobiDBLite consensus disorder prediction 520 538 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1105 Clacu-Chr5:9982023 Clacu11g1535 Clacu-Chr11:26482957 2.00E-98 dispersed
Clacu05g1105 Clacu-Chr5:9982023 Clacu07g0056 Clacu-Chr7:921929 3.50E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1105 - - - 0.0