Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1107 ATGAAGTCGATCAAATCCTCCGGCTTAAACATGGAGCAACCCATTCGTGGATCCTTTGATGAAGGCCAATACAGAAGCCGAAGCATTCACTCCGACGCCGCTAGAATCGATTTGGATAAGAAGGTGAAGAAGGTTCGAGGAAGAGGCAAAACGAAGAACTCGTGGAAACAAGATAGCGAGAAGAGTTTTAAAGAAAAACGCACAATTGAGAGTCTATTTGAGAAGGATTTTGTGGAGAGGCTTCGAAACAGAATCCAAATCCAGACAAGATTTCATTTCGAAGATACTGAAAAGTACTTACCCAGTGATGAATTGGGAACAATTATTCGAAGTGACCAAGCAAGGATGGCGGAGACAATATGGGAAGAAAGCGTAATTCGCCTGGCGCCGCTGTATAGAGCGGCGCTAATGGGCGAATGGGAGATAGCAGAAGCCATTTTCAAGCAAGATTCTAGAGCAATCACGTCGGAGATCAGCCTCTTGAACGAGACTGCTCTCCATGTAGCGGTCGGCACAGGCGGCAATTTGGGATTTGTTGAGAAGCTGGTGAGCTTAATGTGGAAACGATCACTGCCGCTTACACAGGAGGATTTATATGGGAATACTGCGCTTGCTGTTGCCGCCATTGTTGGAAATGTGAAAGCTGCAGAAATCTTGGTCGGGAAAGATGAGATGTTGCCGGCGATGAGAAACCGGGTGAATTACTCGCCGTTGCATCTGGCGGCGAAATATGGGCACAGAGATATGGTTTTGTATCTTCTAGGCGTAACAAAGGACGAAGGGATATTCACCGGTCAATCTGGTGCTAGGCTTCTCAATCTTCTCATTTCATTTGATATCTATGATGTAGCTCTTGATATATTAAATCAACAGCCGAAGTTGGCGGTGGAACAAGATCAATACGGATTCACAGCTCTACAAATGTTGGCTGAAAAACCAGATGTGTTTGAGAGTGGAACAACTCAGCTTGGCTGTTGCCGACGCATCCTTCATCCTCGCTCCCGTGTTGCTGTGGAAGTCTTCGATGCTTCTGATCATCTGCCCATGCAACAAAGTGATATCGAAAGTCCTCCTGAAATCTCAAACAATGCAGGAGTGTTGATGAAGAATGTTTATAGGAAAAAGCATAATAAGAAGCATGAGGAAGCATCTGCAAGAATGGGGAGTGTTGAAGTTGCCATAGCAATTGTAAGAGTTTATCCTTATTCAATTTGGTTCCGCGATAGCCGTGAATGCAATATTTTTCAGATCGCTGTTCTTCATCGTCAACACAAGATTTATAATCTTATATATCAAATGACTTCACACAAGTATTTTGCAGCAGCTTTTCTTGACAATAATGATAACAACATCTTGCATTTAGCTGGTGAGCTTGTTCCATCTCATTCAATCTCTGGTGCAGCTTTGCAATTGCAACGAGAATTGCAGTGGTTTAAGGAAGTTGAAAGATTAGTGCTACCATCTTACAAAAGCATGACAAACAAAGATAACAAAACACCAAGAATGGTATTTAGTGAAGAACATGAAGAGCTAGTTCAGCAAGGTGAAAAATGGATGAAGAACACTGCTTCATCGTACACCGTTGTTGCGGCGCTCATTGCGACGGTTGCATTTGCAGCAATTTTCACTGTACCTGGTGGCAACGACAATGATCAAGGCATCCCTATTCTCATTAACCACAAATTCTTCATGGTTTTTGTAGCAGCAGATGCATTAGCATTAATCACTTCATCTGCTTCAGTAATAATGTTTTTAGGAATACTCACTTCGCGCTACGCAGAAGACGATTTTCTCAAGGTGTTACCTTCGAGATTGATTATCGGTCTCGTCTCGTTGTTCATCTCTATATTATCCATGGTAGCAGCCTTCAGTGCATCCCTTTGCCTAGTTCTTGTTCATCAACTGAGATGGGTGTGGGCTCCAATGATAGTATTTGCCTTGGTTCCTGTTATCTTATTTGCCATGTTGCAATTTCCACTTTTGGTGCAAATGACATCTTCCACATATGGGCCTAGCATTTTTGGTTTGCAAAGTTCAATTCTAAGGAAGACTTTGGTGATGGACTCCCTCCTGGTTCCAAACTATATGATTTGTGTTAGAACAATTTTGCACATAGTTGAGGAAGTTTGTAGATGGTTCTCTCCTCTCATTGGTTCCTTCGAGCCGAATGCAAATGTGATTGTCGTTATGAACCTATTCCCCACTTTTCGGCTCTCATTATCTCGCCGCCGCTCCTTCTCTTTGGTTGCTCTAATTCGAAGCTTGCGAAAGAGCTTCAGAGTGGTTTTAGATCCGTGTTCTGTGATCGACGTTGAGAGAGAGAATGGCTTCTCGTTTCTGGACCCAGGTATTGCGTTCAGTCTAAACGGTGGTGGCAGTGGTTCTGATTCTGAAGCGGAGGAGAGTGACTATGGTGAAGAGCTTGACGACGTACAGGTTGATCCTGGCTCCCAACCGAACAGAAGCAGATATCTGCAAGGGAATGCCAGTGACAGCGAAGATTCTGAGGATAAGAAGCGTACTGTCAGGTCGGCTAAAGATAAGCGTTTTGAGGAGATGTCTGCTACAGTGGATCAGATGAAAAATGCAATGAAGATCAATGACTGGGTTAGCCTGCAGGAGAGTTTTGATAAAATAAATAAGCAGCTTGAGAAAGTCATGCGTGTTACTGAGTCTGAGAAGGTGCCGACTCTTTATATTAAAGCACTTGTGATGCTAGAGGACTTCCTAAATGAAGCCATGGCCAATAAGGAAGCAAAGAAGAAAATGAGTACTAGCAATTCTAAGGCCTTAAATTCAATGAAACAGAAGCTAAAGAAGAACAACAAGCAATATGAAGAGGTAATTGCCAAGTATAGGGAGAATCCTGAGATTGAGGAAGAAAAGGCTGATGAGCTGGAGGAGGAGGAGGAGGATGACGATGAATCTGAATATGAGGATGATCCTTCTAAAATCATGTCAGATTCAGAGCCAGAGCCAGATGTAGATGAAGAAGAAGATCTAGATGATCCAAGTCAAAACTGGGAGAAGAAGAAGAGCAAAAAAAATAAGCTCATGGATAAGCAGTTTATGAAGGATCCTAGTGAGATCACATGGGACACTGTGAACAAGAAATTTAAGGAGGTTGTGGCTGCTCGGGGTAGGAAGGGAACTGGAAGATTTGAGCAGGTTGAACAGCTTACATTCTTAACAAAAGTTGCTAAGACCCCTGCACAAAAGCTTGAGATTTTGTTCAGTGTTGTATCTGCTCAATTTGATGTTAATCCAGGTCTCAGTGGGCATATGCCTATCAGTGTGTGGAAGAAGTGTGTGCAGAACATGCTTTCTATAATTGACATTCTTGTGCAGAATTCCAACATTGTGGTGGATGATATGGTTGAACCTGATGAGAATGAAAGCCAGAAGCCAGCAGACTATAAGGGAACAATACGTGTTTGGGGAAACTTGGTTGCTTTTGTTGAGAGGATTGACACTGAGTTTTTTAAGAGTTTGCAGTGTATTGACCCACATACACGTGAGTATGTTGAAAGACTCAGAGATGAGCCAATGTTTATGGTTCTTGCTCAGAATGTCCAAGCATATTTGGAACGAGTTGGGGATTACAAAGCAGCTTCAAAAGTTGCCCTGAGGCGTGTTGAACTGATCTATTACAAACCACAAGAGGTTTATGATGCCATGAGAAAGCTTGCAGAGCTGTCAGAAGATGGAGATAGTGGAGATGCAAGTGAGGAGGCTAAAGTGGTTGAAGAGAGCAGGGGCCCTGCTGCATTTATTGTCACTCCAGAGCTTGTACCTCGTAAACCCACCTTTCCAGAGAGTAGTAGGGCTTTTATGGACATTCTGGTAACCCTTATCTACCAATATGGAGATGAGCGCACTAAAGCACGAGCTATGCTCTGCGATATTTATCACCACGCTCTCTTGGATGAATTTTATATTTCTCGTGACTTGTTACTGATGAGTCACTTACAGGATAGTATTCAACATTTGGATATTTCAACGCAGATCCTTTTCAATAGGGCAATGGCTCAACTTGGTTTATGTGGCTTTCGGGTTGGCCTGATTAGTGAAGGACATGGCTGTCTTTCAGAATTATATTCTGGTGGAAGGGTGAAGGAATTGCTCGCTCAAGGTGTCTCACAAAGCCGATACCATGAAAAGACTCCAGAACAGGAAAGGCTTGAAAGAAGAAGGCAGATGCCATACCACATGCACATAAATCTTGAGCTCCTGGAGGCTGTGCATTTAATATGTGCTATGCTGCTGGAAGTACCCAACATGGCAGGCAATGTTCATGATGCCAAGCGCAAGGTTATTAGTAAGAACTTTAGACGGTTACTTGAGGTGAGTGAGAGACAAACGTTTACGGGTCCTCCTGAGAATGTCAGAGATCATGTAATGGCTGCTACTCGGGCCCTTCGCAAGGGTGATTTCCAGAAGGCTTTTGATGTCATTGCATCTCTAGATGTATGGAAGCTACTTAGGAATCGTGATGAAGTGCTGGAAATGGTAAAAGGGAAAATCAAGGAGGAGGCTTTGAGGACTTACCTTCTCACATACTCTTCGTCCTACGATTCTCTGAGTTCGGACCAACTCACCCAAATGTTCGACCTTGCAGAGGGTCAAACACACAGGATTGTGAGCAAGATGATGATCAATGAGGAGCTCCATGCAAGTTGGGATCAGCCAAGCGGGTGTGTCATCTTCCACGATGTTACACACACCCGATTACAAGGCCTGGCATTCCAACTGGCTGATAAGTTGTCAATCCTTGCTGAAAGTAACGAGAGAGCAGTTGAGGCAAGAATAGGAGGATTAGATTTACCAATGAGGCGAAGAGACAACCAAGAATATGCTGCTGGAGGGGCTGTAGGAGGGAGTAGCAGGTGGCCAGATAACATGTCGTATAATCAAGGAAGGCATGGTGGTCCTAGTTCGCGTGCAGGATATAGCAGCGGTGGGCGAGGCCAAGGTGGGGCTGGTGGATATTCTAGAGACCGAATGGGTCAGTCTCGAGGAGGCAATGCAGGATATCAAAGCACTCGTTATCAAGACGCCGCATATGGATCAGGGAGGACTGCTTATCAGTCGGGTTCTGCCCGAGGATCCCAGATGGATGCTTCAGCTCGCATGTCTGAAGTGTCTGCTTACTACATAGTGCCGCGAAAGTCATCAGTGACTTTTGCAGGCCGACTGCCGTGGAACCATTGGCAATCTTAG 5220 44.2 MKSIKSSGLNMEQPIRGSFDEGQYRSRSIHSDAARIDLDKKVKKVRGRGKTKNSWKQDSEKSFKEKRTIESLFEKDFVERLRNRIQIQTRFHFEDTEKYLPSDELGTIIRSDQARMAETIWEESVIRLAPLYRAALMGEWEIAEAIFKQDSRAITSEISLLNETALHVAVGTGGNLGFVEKLVSLMWKRSLPLTQEDLYGNTALAVAAIVGNVKAAEILVGKDEMLPAMRNRVNYSPLHLAAKYGHRDMVLYLLGVTKDEGIFTGQSGARLLNLLISFDIYDVALDILNQQPKLAVEQDQYGFTALQMLAEKPDVFESGTTQLGCCRRILHPRSRVAVEVFDASDHLPMQQSDIESPPEISNNAGVLMKNVYRKKHNKKHEEASARMGSVEVAIAIVRVYPYSIWFRDSRECNIFQIAVLHRQHKIYNLIYQMTSHKYFAAAFLDNNDNNILHLAGELVPSHSISGAALQLQRELQWFKEVERLVLPSYKSMTNKDNKTPRMVFSEEHEELVQQGEKWMKNTASSYTVVAALIATVAFAAIFTVPGGNDNDQGIPILINHKFFMVFVAADALALITSSASVIMFLGILTSRYAEDDFLKVLPSRLIIGLVSLFISILSMVAAFSASLCLVLVHQLRWVWAPMIVFALVPVILFAMLQFPLLVQMTSSTYGPSIFGLQSSILRKTLVMDSLLVPNYMICVRTILHIVEEVCRWFSPLIGSFEPNANVIVVMNLFPTFRLSLSRRRSFSLVALIRSLRKSFRVVLDPCSVIDVERENGFSFLDPGIAFSLNGGGSGSDSEAEESDYGEELDDVQVDPGSQPNRSRYLQGNASDSEDSEDKKRTVRSAKDKRFEEMSATVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPTLYIKALVMLEDFLNEAMANKEAKKKMSTSNSKALNSMKQKLKKNNKQYEEVIAKYRENPEIEEEKADELEEEEEDDDESEYEDDPSKIMSDSEPEPDVDEEEDLDDPSQNWEKKKSKKNKLMDKQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPISVWKKCVQNMLSIIDILVQNSNIVVDDMVEPDENESQKPADYKGTIRVWGNLVAFVERIDTEFFKSLQCIDPHTREYVERLRDEPMFMVLAQNVQAYLERVGDYKAASKVALRRVELIYYKPQEVYDAMRKLAELSEDGDSGDASEEAKVVEESRGPAAFIVTPELVPRKPTFPESSRAFMDILVTLIYQYGDERTKARAMLCDIYHHALLDEFYISRDLLLMSHLQDSIQHLDISTQILFNRAMAQLGLCGFRVGLISEGHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAGNVHDAKRKVISKNFRRLLEVSERQTFTGPPENVRDHVMAATRALRKGDFQKAFDVIASLDVWKLLRNRDEVLEMVKGKIKEEALRTYLLTYSSSYDSLSSDQLTQMFDLAEGQTHRIVSKMMINEELHASWDQPSGCVIFHDVTHTRLQGLAFQLADKLSILAESNERAVEARIGGLDLPMRRRDNQEYAAGGAVGGSSRWPDNMSYNQGRHGGPSSRAGYSSGGRGQGGAGGYSRDRMGQSRGGNAGYQSTRYQDAAYGSGRTAYQSGSARGSQMDASARMSEVSAYYIVPRKSSVTFAGRLPWNHWQS 1739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10022996 10045270 - ClG42_05g0110700.10 Clacu05g1107 248854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1107 1739 Pfam Ankyrin repeats (3 copies) 166 254 IPR002110 GO:0005515(InterPro)
Clacu05g1107 1739 MobiDBLite consensus disorder prediction 960 981 - -
Clacu05g1107 1739 MobiDBLite consensus disorder prediction 790 850 - -
Clacu05g1107 1739 MobiDBLite consensus disorder prediction 815 829 - -
Clacu05g1107 1739 Coils Coil 928 969 - -
Clacu05g1107 1739 MobiDBLite consensus disorder prediction 40 60 - -
Clacu05g1107 1739 MobiDBLite consensus disorder prediction 939 959 - -
Clacu05g1107 1739 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 785 1649 IPR027516 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Clacu05g1107 1739 Pfam Domain of unknown function 516 630 IPR026961 -
Clacu05g1107 1739 ProSiteProfiles Ankyrin repeat region circular profile. 233 254 - -
Clacu05g1107 1739 SUPERFAMILY Winged helix DNA-binding domain 1498 1573 IPR036390 -
Clacu05g1107 1739 MobiDBLite consensus disorder prediction 1620 1679 - -
Clacu05g1107 1739 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 1503 1591 IPR000717 -
Clacu05g1107 1739 MobiDBLite consensus disorder prediction 1 26 - -
Clacu05g1107 1739 Gene3D - 111 459 IPR036770 -
Clacu05g1107 1739 ProSiteProfiles PCI domain profile. 1402 1574 IPR000717 -
Clacu05g1107 1739 Pfam PCI domain 1499 1571 IPR000717 -
Clacu05g1107 1739 SMART ANK_2a 161 191 IPR002110 GO:0005515(InterPro)
Clacu05g1107 1739 SMART ANK_2a 233 262 IPR002110 GO:0005515(InterPro)
Clacu05g1107 1739 SMART ANK_2a 199 228 IPR002110 GO:0005515(InterPro)
Clacu05g1107 1739 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 794 1674 IPR027516 GO:0003723(InterPro)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0005852(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro)|GO:0031369(InterPro)|GO:0031369(PANTHER)
Clacu05g1107 1739 MobiDBLite consensus disorder prediction 1630 1645 - -
Clacu05g1107 1739 MobiDBLite consensus disorder prediction 920 1016 - -
Clacu05g1107 1739 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 829 1434 IPR008905 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Clacu05g1107 1739 ProSiteProfiles Ankyrin repeat profile. 233 254 IPR002110 GO:0005515(InterPro)
Clacu05g1107 1739 SUPERFAMILY Ankyrin repeat 130 434 IPR036770 -
Clacu05g1107 1739 MobiDBLite consensus disorder prediction 830 850 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1107 Clacu-Chr5:10022996 Clacu07g0044 Clacu-Chr7:764594 2.70E-17 dispersed
Clacu05g1107 Clacu-Chr5:10022996 Clacu05g1108 Clacu-Chr5:10054500 2.50E-220 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1107 K03252 - csv:101203990 1625.91