Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu05g1118 | ATGGAGATGAATCTCCCCAACTACTGGCCGGCCGAGAAAAATGGCGAAGAGAAGAAGAAGGAAGATCATAAGCAAGGAAACGAAGATGACGACGACAACGATAGCGATAGCGACATGCCGTCGTCGTTGAGCCTTAGAGAGCTTTCTAAGGTTATACTTCCACCTTTGGGAGTTTCAAGCTTTACTGATGACAATAAAGTCCATTCCAATAGATGGATCATCTCCCCCATGAGCTCAAGATACAGGTGGTGGCAGTCGTTCATGGTGGTTTTGGTTGCTTACTCGGTGTGGGTTTACCCATTGGAAGTGGCGTTTATGGACGCAATTCCCAAGCGCCAATTATTAATTGCAGACAGTATTGTCGATCTTTTCTTCGCCATTGATATCTCCTTCACCTTCTTCGTTGCTTACATTGATCATCACACTCAGCTTCTCGTTCGTGATTCTAAGAAGATAGCTATCAGGTACTTGTCAACATGGTTCTTGATGGATTTAGCATCAACAATCCCATTTGAGACACTGGCCTATCTGTCCACAGGCAAATATGATCTTTGTCTCCCTTTTGCCCTCCTAGGATTGCTCAGATTTTGGCGATTGCGACGTGTCAAGCAATTTTTTACCAGGCTTGAGAAGGACATTAGATTCAGCTACTTTTGGGTTCGATGTGCTAGGCTCCTATCTGTCACTTTATTTTATGTCCATTGTGCTGGATGCCTCTACTACTTGTTGGCTGATCGATATCCACATGAAGGGAAGACCTGGATCGCAACCTTATTTCCAAATTTCAAAGAGATTAGCCTTGGAGTGAGATATACTTCAGCCATGTATTGGTCTATCACCACAATGACCACTGTTGGTTATGGTGATCTTCATGCTGTGAACACCGCGGAGATGATCTTTATCATTTTCTACATGCTCTTCAATCTCGGGCTAACTGCTTACTTGATCGGTAACATGACAAACTTAGTCGTTGAAGGAACTCGCCGCACAATGGAATTTAGAAACAGCATCGAAATGGCTTCAAATTTTGTTAACCGAAATCGCCTGCCTTCGAGGGTGAAGGAACACATATTGGCATACATGTGCTTGAGATTCAAGGCTGAGAGCCTAAACCAACAACAGCTGATTGAACAGCTTCCAAAGTCAATTTGCAAAAGCATCTGTCAGCAATTGTTTTTGCCGACCGTGGAGAAAGTCTACCTCTTCAAGGGCGTCTCAAAGGAAACACTTGTGGTGCTGGTAGCAAAGATGAAAGCTGAGTATATACCGCCTAAGGAGGACGTGATAATACAAAACGACACTCCTGATGAAGTTTATATCATTGTGTCTGGGGAAATTGAAATTATTGACTGTGAGATGGATGTGGAACGGATTGTTGGGACGTTACAGTGTGGCAGTATGTTTGGGGAAGTAGGAGCACTTTGTTGCAAAAACCAAAATTTTACATACAGAACCAGAACTCTTTCACAGCTCTTGAAGCTGAAAACAAGTGTACTACAAGAAGCTATGCATATCAAACAAGCAGACAGTATGATCATTGTCAAGAACTTCCTTCAGGAAAGGGAGCTCAGCCACAAAATCACCATAGAAGGTTCGCCCGAAAAAGAGGTGCCAACGTTGATTGAAGAAAAGGATCAAAGTTTTAATTGGAAACACTCCATTGAATTAGATTTTGCTAGGGTGAACATATACAAAGGCCATCCAGTAGCCAGAAAACAGGCTTCTTGTGATGATCCTGGAAAGCTGATCAGACTGCCACATTCAATGGAGGAGCTCAAAAAAATTGCAGGTGAAAAGTTTGGATTTGATGCAAGAAATGCTGTTTTGACAAATGAAGAAGGCTCTGAAATTGATTCTATTGATGTGATAAGGGATAATGATAAGCTTTTTTTTTCATAG | 1899 | 42.29 | MEMNLPNYWPAEKNGEEKKKEDHKQGNEDDDDNDSDSDMPSSLSLRELSKVILPPLGVSSFTDDNKVHSNRWIISPMSSRYRWWQSFMVVLVAYSVWVYPLEVAFMDAIPKRQLLIADSIVDLFFAIDISFTFFVAYIDHHTQLLVRDSKKIAIRYLSTWFLMDLASTIPFETLAYLSTGKYDLCLPFALLGLLRFWRLRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFYVHCAGCLYYLLADRYPHEGKTWIATLFPNFKEISLGVRYTSAMYWSITTMTTVGYGDLHAVNTAEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEMASNFVNRNRLPSRVKEHILAYMCLRFKAESLNQQQLIEQLPKSICKSICQQLFLPTVEKVYLFKGVSKETLVVLVAKMKAEYIPPKEDVIIQNDTPDEVYIIVSGEIEIIDCEMDVERIVGTLQCGSMFGEVGALCCKNQNFTYRTRTLSQLLKLKTSVLQEAMHIKQADSMIIVKNFLQERELSHKITIEGSPEKEVPTLIEEKDQSFNWKHSIELDFARVNIYKGHPVARKQASCDDPGKLIRLPHSMEELKKIAGEKFGFDARNAVLTNEEGSEIDSIDVIRDNDKLFFS | 632 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 10150267 | 10157378 | - | ClG42_05g0111800.10 | Clacu05g1118 | 248865 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu05g1118 | 632 | PRINTS | EAG/ELK/ERG potassium channel family signature | 315 | 324 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Clacu05g1118 | 632 | PRINTS | EAG/ELK/ERG potassium channel family signature | 118 | 128 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Clacu05g1118 | 632 | PRINTS | EAG/ELK/ERG potassium channel family signature | 297 | 308 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Clacu05g1118 | 632 | PRINTS | EAG/ELK/ERG potassium channel family signature | 271 | 288 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Clacu05g1118 | 632 | Gene3D | - | 83 | 324 | - | - | |
| Clacu05g1118 | 632 | PANTHER | POTASSIUM CHANNEL AKT1 | 28 | 543 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| Clacu05g1118 | 632 | Gene3D | Jelly Rolls | 337 | 537 | IPR014710 | - | |
| Clacu05g1118 | 632 | SMART | cnmp_10 | 401 | 518 | IPR000595 | - | |
| Clacu05g1118 | 632 | MobiDBLite | consensus disorder prediction | 12 | 27 | - | - | |
| Clacu05g1118 | 632 | Pfam | Cyclic nucleotide-binding domain | 421 | 503 | IPR000595 | - | |
| Clacu05g1118 | 632 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
| Clacu05g1118 | 632 | SUPERFAMILY | Voltage-gated potassium channels | 76 | 324 | - | - | |
| Clacu05g1118 | 632 | ProSiteProfiles | KHA domain profile. | 560 | 632 | IPR021789 | - | |
| Clacu05g1118 | 632 | FunFam | Potassium channel KAT3 | 83 | 325 | - | - | |
| Clacu05g1118 | 632 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 401 | 520 | IPR000595 | - | |
| Clacu05g1118 | 632 | Pfam | KHA, dimerisation domain of potassium ion channel | 560 | 631 | IPR021789 | - | |
| Clacu05g1118 | 632 | Pfam | Ion transport protein | 81 | 330 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu05g1118 | 632 | FunFam | Potassium channel KAT2 | 389 | 524 | - | - | |
| Clacu05g1118 | 632 | SUPERFAMILY | cAMP-binding domain-like | 328 | 518 | IPR018490 | - | |
| Clacu05g1118 | 632 | CDD | CAP_ED | 401 | 504 | IPR000595 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu05g1118 | Clacu-Chr5:10150267 | Clacu05g1886 | Clacu-Chr5:28045203 | 1.50E-130 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu05g1118 | K21867 | - | csv:101205212 | 1175.23 |