Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1120 ATGAAAATGGAGGAAGACGACGAAGAAAGAAAATCCACCTTCCCAGCCACCACTACCACCAAATACAAAACAGAAGCAAAAAAACTAAAAAATGGTGGAAATTTTCTTTCGACAACACCCGGTTTTTTCTTTTCTTCGGATTTTCCTTTGAAACCCATCTCAATTTCAGTATACCCAGTAAAGAATTCGATGCAAAATCAGGAAACGATGAAGATATTCAGTAGTTTCCTTCTTTGTTTACTCTCTGTAGTAACTGTAACTTCAGCAGCCACTCCAATCGCAAACCCCATCTGCCCAATGGACCTCAACTATGTCCTCAGAATCCCTTGGAATGCCACTGATTGTCGGAACCCTTTCTTCCAGGCCACTGCCAAATCCGCCATGAATGATACCTCCAAAATCCCTTGTTGTCAAACCCTTTTGTCCTTGTTTGGAATTGCTTTGGCCCAACACCTTAAAGAGACTTCTCTTTTCAACCTCCCAGACCTCGCAACCTCCAATTCTTGCCTTCGCGATTACCAATCGAAGCTCTCCTCGCTCTCCCTTCCCGGCGACCTTGTTTCCAATTGCTTTAATCCTTTGCAATTTGTGATCTCTGCTAATGTCTGTGCTGGTATTCAAACTACTCGAGATTGGGTTTCGAAACTTGGCCCTAACTCCCCGCTCGATTCTGGGTGTCGGTCGGAACTTGTTGGTCCTGGTTGTGATGCTTGTCTCGCCGCTGGTCTCAAAGTTCAAGCGACTTTGACTCGAATTGATGGTAATAAATCTCATTCTATGGATTGTTTTTACTTTGCTGTTCTTTATGCTGCTGGCATTGTGAATGAGTCTGGCCCTGAGGGCGACAGTGCGTTGGGTTGCATATTTAATTTGCCATTGAGTACTCAAAAGGATTCCAAAAGTAATCATTCTGCTCTAGTTTATGGCCTTACTGCTGCTGCTGTTGGAATTTTGGTTGTTTTTGTTCTTTTGGGAATAGGATTTTGGTTTTACAAATGGAAAAAATTGGCTCAGAAGTCTAGTTTAGAGTTTGATGTGGAGCTGGATGAACAAGGGTCTAGGCCACATGCAAGGCCAAACACTGGATCAATTTGGTTCAAGATTCAGGAGCTTGAGAAGGCAACTAATAACTTTTCTTCAAAAAACTTCATTGGGAGAGGTGGGTTTGGTTTAGTTTACAAAGGGACATTACCTGATGGAAGTATGGTGGCAGTCAAGAAAGTAATTGAATCAGATTTTCAAGGCAATGCCGAGTTTTGCAATGAGGTTGAAATAATCAGTAATCTAAAGCATAGGAATCTTGTTCCGCTTCGTGGTTGTTGCGTGATCGATGGGGATGACGGTCATGATGAGGGAGCAAGTGAGAGATACCTTGTTTACGATTACATGCCAAATGGAAATCTCGATGACTATTTGTTCCCTATACCATTTGATGAAGTTGGAACTGTAAAAAAATCATTGACATGGCCTCAAAGGAAGAATATTATCTTGGACGTGGCAAAGGGCTTAGCCTATCTGCACTATGGAGTGAAACCTGCCATATATCATAGAGATATCAAGGCGACGAATATATTGCTAGATGCAGACATGAGAGCAAGAGTGGCAGATTTCGGGCTCGCCAAACAAAGCAGGGAAGGACAGTCTCATCTAACGACTCGAGTTGCAGGTACTCATGGGTATTTAGCCCCTGAATATGCGCTTTATGGACAACTAACTGAGAAGAGTGATGTTTATAGCTTTGGAGTAGTTGTTTTGGAGATAATGTGTGGGAGAAAAGCTCTTGATTTCTCTCTGTCGTCATCACCGCGTGCATTCCTGATCACAGATTGGGCTTGGTCCTTGGTGAAAGCTGGAAAAATAGGGGAAACTCTAGACCCTTCACTGCTGAAAGATGGGGATTCTTCTAATTCAAATCCAAAAGCCATAATGGAAAGATTCATTGCGGTTGGAATTTTATGTTCTCATGTGATGGTTGCTTTGAGGCCCACCATTATGGAAGCTCTGAAAATGTTGGAAGGTGACATTGAAGTTCCCCAAATTTCTGATCGGCCAGTGCCTTATGGACATCCTTCATTTGTTGGTGATGGCAGCAACTTCAGTATATCACCGACATTAAGTGGACGTGAATTGCATAACGGTGACATGCTCAGATGA 2154 42.76 MKMEEDDEERKSTFPATTTTKYKTEAKKLKNGGNFLSTTPGFFFSSDFPLKPISISVYPVKNSMQNQETMKIFSSFLLCLLSVVTVTSAATPIANPICPMDLNYVLRIPWNATDCRNPFFQATAKSAMNDTSKIPCCQTLLSLFGIALAQHLKETSLFNLPDLATSNSCLRDYQSKLSSLSLPGDLVSNCFNPLQFVISANVCAGIQTTRDWVSKLGPNSPLDSGCRSELVGPGCDACLAAGLKVQATLTRIDGNKSHSMDCFYFAVLYAAGIVNESGPEGDSALGCIFNLPLSTQKDSKSNHSALVYGLTAAAVGILVVFVLLGIGFWFYKWKKLAQKSSLEFDVELDEQGSRPHARPNTGSIWFKIQELEKATNNFSSKNFIGRGGFGLVYKGTLPDGSMVAVKKVIESDFQGNAEFCNEVEIISNLKHRNLVPLRGCCVIDGDDGHDEGASERYLVYDYMPNGNLDDYLFPIPFDEVGTVKKSLTWPQRKNIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDADMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDFSLSSSPRAFLITDWAWSLVKAGKIGETLDPSLLKDGDSSNSNPKAIMERFIAVGILCSHVMVALRPTIMEALKMLEGDIEVPQISDRPVPYGHPSFVGDGSNFSISPTLSGRELHNGDMLR 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10224599 10226752 - ClG42_05g0112000.10 Clacu05g1120 248867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1120 717 Pfam Protein kinase domain 380 595 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1120 717 ProSiteProfiles Protein kinase domain profile. 378 647 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1120 717 SUPERFAMILY Protein kinase-like (PK-like) 356 672 IPR011009 -
Clacu05g1120 717 SMART serkin_6 378 671 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1120 717 ProSitePatterns Protein kinases ATP-binding region signature. 384 407 IPR017441 GO:0005524(InterPro)
Clacu05g1120 717 FunFam probable receptor-like protein kinase At1g11050 339 462 - -
Clacu05g1120 717 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 463 679 - -
Clacu05g1120 717 Gene3D Phosphorylase Kinase; domain 1 343 462 - -
Clacu05g1120 717 PANTHER OS01G0750732 PROTEIN 114 680 IPR050885 -
Clacu05g1120 717 Pfam SPARK 96 263 IPR043891 -
Clacu05g1120 717 Gene3D Transferase(Phosphotransferase) domain 1 463 681 - -
Clacu05g1120 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 514 526 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1120 Clacu-Chr5:10224599 Clacu09g0656 Clacu-Chr9:5684249 4.50E-99 dispersed
Clacu05g1120 Clacu-Chr5:10224599 Clacu08g1938 Clacu-Chr8:28402653 6.30E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73569 PF00069 Pkinase 9.80E-43 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1120 - - - 0.0