Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1143 ATGGAGATTGATCTATCACTCAAAATAGATCATCACAAGGAAGAAATATTCAAACAACAAAAAGATCTTCAACAACAACAACAAATAATTGGAACAGTTGATGTTCTTGCAGCTTCTACCTCTGCTTTCAAACTGTTTTTGCCACACAACATTAATGTAGGAGGAGAGATTTCAGAGTTACAAATGGAAATGGATCGTATGAAGGAAGAGAACAAAGTGTTGAGAAAAGCTGTGGAACAAACAATGAAAGATTATTATGATCTTGAAATGAAAATTGGTATCATTCAACAAAACAATAACCTCAACAATAAGGACTCTCACAACTTCCTATCATTCCATGAAAATGAGAACAAGAGGCATGAAGAACCAACAAAACAAGACCTCGAACTCGGAGAAATGGCGAAGAAGAAGAGACGAGTTCGGTCGCCATCGAAGGAGGACGAAATGAGGGAGAGTGAACTAGGGTTATCATTAGGGCTCCATACTAAGAACAATGATTTGGATCAAGAAGATAATCATAGGGAATTATTACAAGAAGAAAGAAGAGAAAAGAAGAAGGAAGATTCAATAATGTCCAACTTCTACTCAATCCAAAACAAGCCACAAAGACCTGAATTGCAAGCAATGGCACCCCCACAAAACAGAAAAGCTAGGGTTTCTGTGAGAGCAAGATGTGAATCTGCCACGATGAACGATGGTTGCCAATGGAGGAAATATGGTCAAAAAATTGCGAAGGGAAATCCATGCCCTCGAGCCTATTATCGTTGCACGGTTGCACCAGGATGCCCAGTTAGAAAACAGGTTCAAAGATGTTTAGAAGACATGTCAATTCTTATAACAACGTACGAAGGAACACATAATCATCCACTTCCTGTTGGAGCCACAGCCATGGCTTCCACAGCTTCTGCAGCAGCTTCCTTTATGCTCTTAGACTCCACTAATACTACTAATAATCTTTCTTCTCTTCCAAACCCTCAAAACCCTAATTTTCTAAACCCTCAAAACCCTAATATTCTAAACTCCTCTTCCTATTCTCCAACTAATTTCCTCCAAACTCAAAACCCTAATCAACCCTCAACCAATACATTTTACACTCCATTAATCCCCACATCTTCAACCTCAAACTTCCCCCAACCCTCCAATTGGATCAATACCAACCCTACTTCCTTTTACCATACCAACTTTCCCCTTCACGGCCGCTCCTTGAGACCACCCGACGATAATAAGCCACCGTTCACACCTGAGAGTGTGTCTGCTATTGCTTCTGACCCTAAGTTTCGAGTCGCGGTTGCGGCTGCCATTTCTTCGCTCATTAACAAAGAGAATAACAACACAACAACGTCAAATTCTCCTATCGAAGATTCTTCTTCTTTCGGTCCAAGTAAGGATGGGAAAGGCAGCAGTGGCGGCGGTGATAGTGATGGCAGAAACAAGAAATGGGTTGTTGAGTCCCTCTCATCAAATGGTAATTAA 1473 40.87 MEIDLSLKIDHHKEEIFKQQKDLQQQQQIIGTVDVLAASTSAFKLFLPHNINVGGEISELQMEMDRMKEENKVLRKAVEQTMKDYYDLEMKIGIIQQNNNLNNKDSHNFLSFHENENKRHEEPTKQDLELGEMAKKKRRVRSPSKEDEMRESELGLSLGLHTKNNDLDQEDNHRELLQEERREKKKEDSIMSNFYSIQNKPQRPELQAMAPPQNRKARVSVRARCESATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSTNTTNNLSSLPNPQNPNFLNPQNPNILNSSSYSPTNFLQTQNPNQPSTNTFYTPLIPTSSTSNFPQPSNWINTNPTSFYHTNFPLHGRSLRPPDDNKPPFTPESVSAIASDPKFRVAVAAAISSLINKENNNTTTSNSPIEDSSSFGPSKDGKGSSGGGDSDGRNKKWVVESLSSNGN 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10493681 10498591 + ClG42_05g0114300.10 Clacu05g1143 248890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1143 490 Pfam WRKY DNA -binding domain 231 289 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g1143 490 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 22 445 IPR044810 GO:0003700(InterPro)
Clacu05g1143 490 MobiDBLite consensus disorder prediction 196 217 - -
Clacu05g1143 490 MobiDBLite consensus disorder prediction 131 154 - -
Clacu05g1143 490 MobiDBLite consensus disorder prediction 131 171 - -
Clacu05g1143 490 MobiDBLite consensus disorder prediction 395 418 - -
Clacu05g1143 490 SUPERFAMILY WRKY DNA-binding domain 223 291 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g1143 490 ProSiteProfiles WRKY domain profile. 225 291 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g1143 490 MobiDBLite consensus disorder prediction 441 490 - -
Clacu05g1143 490 MobiDBLite consensus disorder prediction 441 463 - -
Clacu05g1143 490 SMART WRKY_cls 230 290 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g1143 490 Coils Coil 160 187 - -
Clacu05g1143 490 Gene3D WRKY domain 215 292 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g1143 490 Coils Coil 50 84 - -
Clacu05g1143 490 FunFam probable WRKY transcription factor 31 215 292 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1520 Clacu-Chr1:27283391 Clacu05g1143 Clacu-Chr5:10493681 1.70E-43 dispersed
Clacu02g0209 Clacu-Chr2:2011659 Clacu05g1143 Clacu-Chr5:10493681 2.50E-41 dispersed
Clacu05g1143 Clacu-Chr5:10493681 Clacu10g1288 Clacu-Chr10:25790256 3.60E-23 dispersed
Clacu05g1143 Clacu-Chr5:10493681 Clacu06g1741 Clacu-Chr6:28004319 9.00E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47676 PF03106 WRKY 2.00E-24 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1143 - - - 0.0