Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu05g1143 | ATGGAGATTGATCTATCACTCAAAATAGATCATCACAAGGAAGAAATATTCAAACAACAAAAAGATCTTCAACAACAACAACAAATAATTGGAACAGTTGATGTTCTTGCAGCTTCTACCTCTGCTTTCAAACTGTTTTTGCCACACAACATTAATGTAGGAGGAGAGATTTCAGAGTTACAAATGGAAATGGATCGTATGAAGGAAGAGAACAAAGTGTTGAGAAAAGCTGTGGAACAAACAATGAAAGATTATTATGATCTTGAAATGAAAATTGGTATCATTCAACAAAACAATAACCTCAACAATAAGGACTCTCACAACTTCCTATCATTCCATGAAAATGAGAACAAGAGGCATGAAGAACCAACAAAACAAGACCTCGAACTCGGAGAAATGGCGAAGAAGAAGAGACGAGTTCGGTCGCCATCGAAGGAGGACGAAATGAGGGAGAGTGAACTAGGGTTATCATTAGGGCTCCATACTAAGAACAATGATTTGGATCAAGAAGATAATCATAGGGAATTATTACAAGAAGAAAGAAGAGAAAAGAAGAAGGAAGATTCAATAATGTCCAACTTCTACTCAATCCAAAACAAGCCACAAAGACCTGAATTGCAAGCAATGGCACCCCCACAAAACAGAAAAGCTAGGGTTTCTGTGAGAGCAAGATGTGAATCTGCCACGATGAACGATGGTTGCCAATGGAGGAAATATGGTCAAAAAATTGCGAAGGGAAATCCATGCCCTCGAGCCTATTATCGTTGCACGGTTGCACCAGGATGCCCAGTTAGAAAACAGGTTCAAAGATGTTTAGAAGACATGTCAATTCTTATAACAACGTACGAAGGAACACATAATCATCCACTTCCTGTTGGAGCCACAGCCATGGCTTCCACAGCTTCTGCAGCAGCTTCCTTTATGCTCTTAGACTCCACTAATACTACTAATAATCTTTCTTCTCTTCCAAACCCTCAAAACCCTAATTTTCTAAACCCTCAAAACCCTAATATTCTAAACTCCTCTTCCTATTCTCCAACTAATTTCCTCCAAACTCAAAACCCTAATCAACCCTCAACCAATACATTTTACACTCCATTAATCCCCACATCTTCAACCTCAAACTTCCCCCAACCCTCCAATTGGATCAATACCAACCCTACTTCCTTTTACCATACCAACTTTCCCCTTCACGGCCGCTCCTTGAGACCACCCGACGATAATAAGCCACCGTTCACACCTGAGAGTGTGTCTGCTATTGCTTCTGACCCTAAGTTTCGAGTCGCGGTTGCGGCTGCCATTTCTTCGCTCATTAACAAAGAGAATAACAACACAACAACGTCAAATTCTCCTATCGAAGATTCTTCTTCTTTCGGTCCAAGTAAGGATGGGAAAGGCAGCAGTGGCGGCGGTGATAGTGATGGCAGAAACAAGAAATGGGTTGTTGAGTCCCTCTCATCAAATGGTAATTAA | 1473 | 40.87 | MEIDLSLKIDHHKEEIFKQQKDLQQQQQIIGTVDVLAASTSAFKLFLPHNINVGGEISELQMEMDRMKEENKVLRKAVEQTMKDYYDLEMKIGIIQQNNNLNNKDSHNFLSFHENENKRHEEPTKQDLELGEMAKKKRRVRSPSKEDEMRESELGLSLGLHTKNNDLDQEDNHRELLQEERREKKKEDSIMSNFYSIQNKPQRPELQAMAPPQNRKARVSVRARCESATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSTNTTNNLSSLPNPQNPNFLNPQNPNILNSSSYSPTNFLQTQNPNQPSTNTFYTPLIPTSSTSNFPQPSNWINTNPTSFYHTNFPLHGRSLRPPDDNKPPFTPESVSAIASDPKFRVAVAAAISSLINKENNNTTTSNSPIEDSSSFGPSKDGKGSSGGGDSDGRNKKWVVESLSSNGN | 490 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 10493681 | 10498591 | + | ClG42_05g0114300.10 | Clacu05g1143 | 248890 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu05g1143 | 490 | Pfam | WRKY DNA -binding domain | 231 | 289 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu05g1143 | 490 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 22 | 445 | IPR044810 | GO:0003700(InterPro) | |
Clacu05g1143 | 490 | MobiDBLite | consensus disorder prediction | 196 | 217 | - | - | |
Clacu05g1143 | 490 | MobiDBLite | consensus disorder prediction | 131 | 154 | - | - | |
Clacu05g1143 | 490 | MobiDBLite | consensus disorder prediction | 131 | 171 | - | - | |
Clacu05g1143 | 490 | MobiDBLite | consensus disorder prediction | 395 | 418 | - | - | |
Clacu05g1143 | 490 | SUPERFAMILY | WRKY DNA-binding domain | 223 | 291 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu05g1143 | 490 | ProSiteProfiles | WRKY domain profile. | 225 | 291 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu05g1143 | 490 | MobiDBLite | consensus disorder prediction | 441 | 490 | - | - | |
Clacu05g1143 | 490 | MobiDBLite | consensus disorder prediction | 441 | 463 | - | - | |
Clacu05g1143 | 490 | SMART | WRKY_cls | 230 | 290 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu05g1143 | 490 | Coils | Coil | 160 | 187 | - | - | |
Clacu05g1143 | 490 | Gene3D | WRKY domain | 215 | 292 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu05g1143 | 490 | Coils | Coil | 50 | 84 | - | - | |
Clacu05g1143 | 490 | FunFam | probable WRKY transcription factor 31 | 215 | 292 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g1520 | Clacu-Chr1:27283391 | Clacu05g1143 | Clacu-Chr5:10493681 | 1.70E-43 | dispersed | |
Clacu02g0209 | Clacu-Chr2:2011659 | Clacu05g1143 | Clacu-Chr5:10493681 | 2.50E-41 | dispersed | |
Clacu05g1143 | Clacu-Chr5:10493681 | Clacu10g1288 | Clacu-Chr10:25790256 | 3.60E-23 | dispersed | |
Clacu05g1143 | Clacu-Chr5:10493681 | Clacu06g1741 | Clacu-Chr6:28004319 | 9.00E-43 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47676 | PF03106 | WRKY | 2.00E-24 | CL0274 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu05g1143 | - | - | - | 0.0 |