Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1148 ATGTCATTCCGAAGCATTGTTCGCGATGTGAGGGATAGTATTGGGAGCTTATCTAGACGGGGTTTTGAGGTCAAGTTGAGTGGTCATCATAGAGGAAAGTCCAATGCATCGTCGCTGAATGATCTACATGACCAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAGTCTTCCACCCGAGCTGTTGTATGATGTCATTCGAAGACTTGAAGAGAGTGAAAACACATGGCCTTCACGAAAGAATGTCGTTGCCTGTGCTGCAGTATGTCGTTCTTGGAGAATTATGTGCATGGAGATAGTTAAAGGCCCAGAAATTTGTGGGAAGCTTACCTTCCCAGTGTCACTGAAGCAGCCAGGACCACGCGATGGATCTGTACAGTGCTTCATTAAGAGGGATAAATCCAACCTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTGGTTGAAAATGGGAAATTTCTTCTCTCTGCAAAGCGTACACGAAGAACTACCAGCACAGAGTATATTATCTCGATGGACGCAGAAAACATTTCGAGATCAAGTAGCTCTTACATCGGAAAACTGAGGTCGAACTTTCTTGGAACAAAATTCATCGTCTATGATACTCAACCTCCATACACCGCTGCCCCGCTCCCTCCTCCGGGGAAAACTAGCCGTAGATTTTATTCAAAAAAGGTCTCACCAAAAGTCCCAACTGGCAGTTATAACATAGCCCATATAAGTTATGAACTAAACGTCTTAGGCACACGGGGACCCCGGAGAATGCACTGTATAATGCATTCAATACCAGTGTCTTCTCTTGATGCTGGTGGCACTGTTCCAGGACAACCCGAACTCCTCCCTCCCAACTCCCTCGACGACTCATTTCGGAGTGCATCCTTCTCCAAAGCCCTAGATCATTCCATGGAGTTCAGTAGTGCTAGATTTTCAGAAATTGGGAGGGCAGCATTGGATGGCGACGAGGAGGGAAAGATGAGACCTTTGGTTCTCAAAAACAAGCCCCCAAGATGGCACGAACAACTGCAATGTTGGTGCCTCAACTTTCGTGGGCGGGTAACCGTTGCATCGGTTAAGAACTTTCAGTTAATTGCAGCAATACAGCCAGCTGCTGGCGCTCCAACCCCGTCTCAACCAGGCCCACCCGAGCACGACAAGATCATTCTTCAGTTCGGGAAGGTCGGTAAAGACATGTTCACGATGGATTATCGTTATCCGCTCTCTGCTTTTCAGGCTTTTGCTATATGCTTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 47.16 MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNASSLNDLHDQPPVVQNGCWASLPPELLYDVIRRLEESENTWPSRKNVVACAAVCRSWRIMCMEIVKGPEICGKLTFPVSLKQPGPRDGSVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVSSLDAGGTVPGQPELLPPNSLDDSFRSASFSKALDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAIQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10543232 10545491 + ClG42_05g0114800.10 Clacu05g1148 248895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1148 428 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515(InterPro)
Clacu05g1148 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Clacu05g1148 428 PANTHER TUBBY-RELATED 44 427 - -
Clacu05g1148 428 Pfam F-box-like 54 97 IPR001810 GO:0005515(InterPro)
Clacu05g1148 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Clacu05g1148 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Clacu05g1148 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Clacu05g1148 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Clacu05g1148 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Clacu05g1148 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Clacu05g1148 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Clacu05g1148 428 CDD F-box_AtTLP-like 54 98 - -
Clacu05g1148 428 Pfam Tub family 115 423 IPR000007 -
Clacu05g1148 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Clacu05g1148 428 Gene3D - 49 101 - -
Clacu05g1148 428 FunFam Tubby-like F-box protein 111 428 - -
Clacu05g1148 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Clacu05g1148 428 Gene3D Tubby Protein; Chain A 113 422 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2022 Clacu-Chr1:32105999 Clacu05g1148 Clacu-Chr5:10543232 7.20E-118 dispersed
Clacu05g0667 Clacu-Chr5:5615677 Clacu05g1148 Clacu-Chr5:10543232 1.60E-119 dispersed
Clacu05g1148 Clacu-Chr5:10543232 Clacu08g0497 Clacu-Chr8:8779629 2.30E-191 dispersed
Clacu05g1148 Clacu-Chr5:10543232 Clacu05g2058 Clacu-Chr5:29510734 8.80E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47677 PF01167 Tub 8.00E-117 CL0395 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1148 K19600 - csv:101216314 867.84