Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1148 ATGTCATTCCGAAGCATTGTTCGCGATGTGAGGGATAGTATTGGGAGCTTATCTAGACGGGGTTTTGAGGTCAAGTTGAGTGGTCATCATAGAGGAAAGTCCAATGCATCGTCGCTGAATGATCTACATGACCAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAGTCTTCCACCCGAGCTGTTGTATGATGTCATTCGAAGACTTGAAGAGAGTGAAAACACATGGCCTTCACGAAAGAATGTCGTTGCCTGTGCTGCAGTATGTCGTTCTTGGAGAATTATGTGCATGGAGATAGTTAAAGGCCCAGAAATTTGTGGGAAGCTTACCTTCCCAGTGTCACTGAAGCAGCCAGGACCACGCGATGGATCTGTACAGTGCTTCATTAAGAGGGATAAATCCAACCTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTGGTTGAAAATGGGAAATTTCTTCTCTCTGCAAAGCGTACACGAAGAACTACCAGCACAGAGTATATTATCTCGATGGACGCAGAAAACATTTCGAGATCAAGTAGCTCTTACATCGGAAAACTGAGGTCGAACTTTCTTGGAACAAAATTCATCGTCTATGATACTCAACCTCCATACACCGCTGCCCCGCTCCCTCCTCCGGGGAAAACTAGCCGTAGATTTTATTCAAAAAAGGTCTCACCAAAAGTCCCAACTGGCAGTTATAACATAGCCCATATAAGTTATGAACTAAACGTCTTAGGCACACGGGGACCCCGGAGAATGCACTGTATAATGCATTCAATACCAGTGTCTTCTCTTGATGCTGGTGGCACTGTTCCAGGACAACCCGAACTCCTCCCTCCCAACTCCCTCGACGACTCATTTCGGAGTGCATCCTTCTCCAAAGCCCTAGATCATTCCATGGAGTTCAGTAGTGCTAGATTTTCAGAAATTGGGAGGGCAGCATTGGATGGCGACGAGGAGGGAAAGATGAGACCTTTGGTTCTCAAAAACAAGCCCCCAAGATGGCACGAACAACTGCAATGTTGGTGCCTCAACTTTCGTGGGCGGGTAACCGTTGCATCGGTTAAGAACTTTCAGTTAATTGCAGCAATACAGCCAGCTGCTGGCGCTCCAACCCCGTCTCAACCAGGCCCACCCGAGCACGACAAGATCATTCTTCAGTTCGGGAAGGTCGGTAAAGACATGTTCACGATGGATTATCGTTATCCGCTCTCTGCTTTTCAGGCTTTTGCTATATGCTTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 47.16 MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNASSLNDLHDQPPVVQNGCWASLPPELLYDVIRRLEESENTWPSRKNVVACAAVCRSWRIMCMEIVKGPEICGKLTFPVSLKQPGPRDGSVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVSSLDAGGTVPGQPELLPPNSLDDSFRSASFSKALDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAIQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10543232 10545491 + ClG42_05g0114800.10 Clacu05g1148 248895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1148 428 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515(InterPro)
Clacu05g1148 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Clacu05g1148 428 PANTHER TUBBY-RELATED 44 427 - -
Clacu05g1148 428 Pfam F-box-like 54 97 IPR001810 GO:0005515(InterPro)
Clacu05g1148 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Clacu05g1148 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Clacu05g1148 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Clacu05g1148 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Clacu05g1148 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Clacu05g1148 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Clacu05g1148 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Clacu05g1148 428 CDD F-box_AtTLP-like 54 98 - -
Clacu05g1148 428 Pfam Tub family 115 423 IPR000007 -
Clacu05g1148 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Clacu05g1148 428 Gene3D - 49 101 - -
Clacu05g1148 428 FunFam Tubby-like F-box protein 111 428 - -
Clacu05g1148 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Clacu05g1148 428 Gene3D Tubby Protein; Chain A 113 422 IPR025659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1148 K19600 - - csv:101216314 867.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2022 Clacu-Chr1:32105999 Clacu05g1148 Clacu-Chr5:10543232 7.20E-118 dispersed
Clacu05g0667 Clacu-Chr5:5615677 Clacu05g1148 Clacu-Chr5:10543232 1.60E-119 dispersed
Clacu05g1148 Clacu-Chr5:10543232 Clacu08g0497 Clacu-Chr8:8779629 2.30E-191 dispersed
Clacu05g1148 Clacu-Chr5:10543232 Clacu05g2058 Clacu-Chr5:29510734 8.80E-119 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g0497 . 1 431 TUB Transcription Factor Family AT1G76900 72.7 6.8e-178 620.5
Clacu05g1148 . 1 428 TUB Transcription Factor Family AT1G76900 69.9 2.6e-169 592.0
Clacu08g0848 . 1 432 TUB Transcription Factor Family AT1G76900 68.6 1.7e-168 589.3
Clacu05g0667 . 13 387 TUB Transcription Factor Family AT1G76900 50.7 3.2e-111 399.1
Clacu05g1148 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 8.0e-102 367.1
Clacu08g0497 . 173 431 TUB Transcription Factor Family AT1G25280 67.7 4.7e-94 341.3
Clacu08g0848 . 175 432 TUB Transcription Factor Family AT1G25280 70.0 2.0e-92 335.9
Clacu05g0667 . 154 387 TUB Transcription Factor Family AT1G25280 53.6 4.7e-70 261.5
Clacu05g2058 . 309 536 TUB Transcription Factor Family AT1G25280 53.8 1.4e-66 250.0
Clacu01g2022 . 176 413 TUB Transcription Factor Family AT1G25280 51.3 1.1e-63 240.4
Clacu06g0531 . 154 362 TUB Transcription Factor Family AT1G25280 50.2 2.4e-53 206.1
Clacu05g0667 . 98 387 TUB Transcription Factor Family AT5G18680 62.4 1.5e-96 349.7
Clacu06g0531 . 98 362 TUB Transcription Factor Family AT5G18680 61.0 1.4e-86 316.6
Clacu08g0497 . 112 431 TUB Transcription Factor Family AT5G18680 52.8 3.8e-84 308.5
Clacu08g0848 . 112 432 TUB Transcription Factor Family AT5G18680 51.2 1.9e-83 306.2
Clacu05g1148 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 9.2e-83 303.9
Clacu05g2058 . 245 536 TUB Transcription Factor Family AT5G18680 51.9 3.4e-77 285.4
Clacu01g2022 . 1 413 TUB Transcription Factor Family AT2G18280 61.3 1.6e-138 489.6
Clacu05g2058 . 131 536 TUB Transcription Factor Family AT2G18280 59.0 4.4e-125 444.9
Clacu05g1148 . 1 428 TUB Transcription Factor Family AT2G18280 52.9 3.6e-119 425.2
Clacu08g0497 . 1 431 TUB Transcription Factor Family AT2G18280 52.0 2.2e-116 416.0
Clacu05g0667 . 1 387 TUB Transcription Factor Family AT2G18280 53.8 8.4e-116 414.1
Clacu08g0848 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 1.1e-112 403.7
Clacu06g0531 . 1 362 TUB Transcription Factor Family AT2G18280 51.3 6.5e-100 361.3
Clacu05g0667 . 1 387 TUB Transcription Factor Family AT2G47900 68.7 1.5e-160 562.8
Clacu06g0531 . 1 362 TUB Transcription Factor Family AT2G47900 67.3 2.1e-146 515.8
Clacu08g0497 . 1 431 TUB Transcription Factor Family AT2G47900 55.3 1.0e-132 470.3
Clacu08g0848 . 1 432 TUB Transcription Factor Family AT2G47900 56.6 2.5e-131 465.7
Clacu05g1148 . 1 428 TUB Transcription Factor Family AT2G47900 56.6 9.6e-131 463.8
Clacu05g2058 . 140 536 TUB Transcription Factor Family AT2G47900 55.4 4.6e-117 418.3
Clacu01g2022 . 1 413 TUB Transcription Factor Family AT2G47900 53.6 2.8e-114 409.1
Clacu07g1025 . 53 383 TUB Transcription Factor Family AT2G47900 52.1 2.3e-100 362.8
Clacu09g0346 . 82 297 TUB Transcription Factor Family AT1G16070 61.4 8.5e-73 270.8
Clacu08g0497 . 67 431 TUB Transcription Factor Family AT1G43640 70.2 1.3e-147 519.6
Clacu05g1148 . 66 428 TUB Transcription Factor Family AT1G43640 68.0 1.1e-146 516.5
Clacu08g0848 . 65 432 TUB Transcription Factor Family AT1G43640 65.8 3.1e-141 498.4
Clacu05g0667 . 49 387 TUB Transcription Factor Family AT1G43640 53.4 2.8e-105 379.0
Clacu05g2058 . 198 536 TUB Transcription Factor Family AT1G43640 50.1 2.3e-99 359.4
Clacu06g0531 . 49 362 TUB Transcription Factor Family AT1G43640 50.7 2.4e-93 339.3
Clacu05g2058 . 164 536 TUB Transcription Factor Family AT1G47270 64.4 1.0e-134 476.9
Clacu01g2022 . 33 413 TUB Transcription Factor Family AT1G47270 56.7 2.9e-121 432.2
Clacu05g1148 . 1 428 TUB Transcription Factor Family AT1G47270 52.1 1.2e-114 410.2
Clacu08g0497 . 30 431 TUB Transcription Factor Family AT1G47270 51.6 1.9e-112 402.9
Clacu08g0848 . 48 432 TUB Transcription Factor Family AT1G47270 55.0 5.6e-112 401.4
Clacu05g0667 . 1 387 TUB Transcription Factor Family AT1G47270 50.5 2.5e-104 375.9
Clacu07g1025 . 50 383 TUB Transcription Factor Family AT1G53320 76.8 9.2e-152 533.5
Clacu05g0667 . 98 387 TUB Transcription Factor Family AT3G06380 63.8 4.9e-97 351.3
Clacu05g1148 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 4.5e-82 301.6
Clacu06g0531 . 98 362 TUB Transcription Factor Family AT3G06380 60.2 4.5e-82 301.6
Clacu08g0848 . 116 432 TUB Transcription Factor Family AT3G06380 52.1 6.4e-81 297.7
Clacu08g0497 . 116 431 TUB Transcription Factor Family AT3G06380 50.3 4.2e-80 295.0
Clacu05g2058 . 249 536 TUB Transcription Factor Family AT3G06380 52.9 3.5e-79 292.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47677 PF01167 Tub 8.00E-117 CL0395 Clacu TF