Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1165 ATGGCCGCCACCGCATTGAGCAGAGCTTTGTTTCTAATGGGGTTTCTTCTCTTTCTTCAACTGCAGCTTCCCGAAACAATGGCGGATTGTCCCTTGGACTTGAGTGGATCAAACTTTACTTTAGTTGCTTCTATTTGCTCTAACCCCAATGAAAGAGGGAAGTGCTGCCGCTATATCAATGCATTTGTTGCAGTTTCTGTTGCTCAGCTTGCAAATGCAACCGGTGTATTGGGAGTTTCTTCAGACTTGTCTAACATTTGCCTGCAATCTATATTTCAAACCATGGGATTGTATGGAGTTCCTAGAAATGCCACGGTTTTCTGTGGGGTTGGAACAAAAATTCCAGTGAACTACGCATGTAGAGGCCGCGAAACTGTCACACAGATGCTGGAATCTCCGAAATTTACAAACGTCAGTGAAAATTGCAAGTTGCCACTATCGGAGGAGAGTACTTGTAGGAAGTGTATTAATGCTGGGATTTTATATCTCCGCAATCTGATTGGAAGAGAAGATAATATAACGTTGAATACTTGTCGCGACGCTACATTTGTTGCACTTGCTAGCCAACTTGATCCTGCTTCAGTTGTTGATCTTGCAACCTGCTTCTTTGGAGTTCAAGGCCTTAACAAGCCTCCAGCTCCACCCCCATCTTTCGCTACACCTGATATTTCCCCAAGTCCATCAGCTGCTGAGAGTCCGGGGCCACTGACGCTAGGTGTTTCTGGTGATAAAAGTCATGAACATCATTCCTACCATCTAACATTAGTGGCGGGTATTGGCATTGCGGTGACTGTCGCTTCTGTAATGATGCTGGTTGTCTTGATTGTGCTGATTCGAAGGAAAAGCAGAGAGCTAAAGGATTCTGATAAGACGGATGTTAACTCTTCAAAATCCTTCCCTTCTCGTCCCATCAAAAAGTATCAGGAAGGACCTTCAATGTTTAAAAAGTTCAGCTATAAGGAGATCAAGAAGGCAACAGATAGTTTTAGTACAACAATTGGTCAAGGAGGATATGGAACTGTTTATAAAGCTCAATTCAGTGATGACTTAGTGGTAGCTGTTAAGAGGATGAACAAATTCTCCGAGCAAGGGGATGATGAATTTGGCAGAGAAATAGAGCTGCTTGCGAGATTACATCACCGACATCTTGTTGCTTTAAGGGGCTTTTGTGTTGAAAAGCATGAACGGTTTCTTGTATACGAGTATATGGCTAATGGAAGCTTGAAGGATCATCTTCATGCTCCTGGCAGGACCCCTCTAAGTTGGCGGACAAGAATCCAAATTGCCATTGATGTCGCCAATGCTCTGGAGTATCTTCACTATTATTGTGATCCCCCACTGTGCCATAGAGACATTAAGTCCAGCAACATTTTACTGGATGAGAACTTTGTTGCTAAGGTTGCTGATTTTGGCCTTGCACACGCTTCAAAGGGTGGTTCTATTTTCTTTGAACCTGTAAATACCGATATCCGGGGAACGCCAGGTTATATGGATCCCGAGTATGTTATCACACAAGAACTTACTGAGAAAAGTGATATATACAGCTATGGCGTGCTACTTCTGGAAATAGTTACTGGCAGACGTGCGATACAAGACGGGAAGAATTTGGTTGAATGGTCCCTGGGGTACATGATTTCAGATTCAAGGATATCCGAACTAGTAGATCCAAGTCTCAAGAGTTCTTTTAACTTGGACCAACTTCACACGGTTCTGTCAATTGTGAGATGGTGCACCGAGGGAGAAGGCAGGGCAAGGCCTTCAATTAAACAGGTGCTTCGACTATTGTACGAGAGCTCGGACCCAATGCATCAAGGGCTCGTAGAGGCTGTGGATGATGAAGAATATGGAGGTATTGAAGGGAGACAGAGCATGAGCAAGAGAAAAATGCATAAAAGTGATGCAATTTTCCACAGTGGAGATGGAAGGTATCTTGCTTCTTCATCAAGCACATCTAGGTCATATTGTAGTAGAAGCTTTTTGCTTGAAACTGGTTCACCACAGTCTCCTCCCAATAATTTGTCTGTTTCAGACCAATTGTTTTAG 2043 43.47 MAATALSRALFLMGFLLFLQLQLPETMADCPLDLSGSNFTLVASICSNPNERGKCCRYINAFVAVSVAQLANATGVLGVSSDLSNICLQSIFQTMGLYGVPRNATVFCGVGTKIPVNYACRGRETVTQMLESPKFTNVSENCKLPLSEESTCRKCINAGILYLRNLIGREDNITLNTCRDATFVALASQLDPASVVDLATCFFGVQGLNKPPAPPPSFATPDISPSPSAAESPGPLTLGVSGDKSHEHHSYHLTLVAGIGIAVTVASVMMLVVLIVLIRRKSRELKDSDKTDVNSSKSFPSRPIKKYQEGPSMFKKFSYKEIKKATDSFSTTIGQGGYGTVYKAQFSDDLVVAVKRMNKFSEQGDDEFGREIELLARLHHRHLVALRGFCVEKHERFLVYEYMANGSLKDHLHAPGRTPLSWRTRIQIAIDVANALEYLHYYCDPPLCHRDIKSSNILLDENFVAKVADFGLAHASKGGSIFFEPVNTDIRGTPGYMDPEYVITQELTEKSDIYSYGVLLLEIVTGRRAIQDGKNLVEWSLGYMISDSRISELVDPSLKSSFNLDQLHTVLSIVRWCTEGEGRARPSIKQVLRLLYESSDPMHQGLVEAVDDEEYGGIEGRQSMSKRKMHKSDAIFHSGDGRYLASSSSTSRSYCSRSFLLETGSPQSPPNNLSVSDQLF 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10719003 10725881 - ClG42_05g0116500.10 Clacu05g1165 248912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1165 680 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524(InterPro)
Clacu05g1165 680 SUPERFAMILY Protein kinase-like (PK-like) 308 596 IPR011009 -
Clacu05g1165 680 FunFam Putative receptor-like protein kinase 296 402 - -
Clacu05g1165 680 Pfam SPARK 28 168 IPR043891 -
Clacu05g1165 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g1165 680 Gene3D Phosphorylase Kinase; domain 1 290 402 - -
Clacu05g1165 680 Gene3D Transferase(Phosphotransferase) domain 1 403 614 - -
Clacu05g1165 680 ProSiteProfiles Protein kinase domain profile. 327 606 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1165 680 SMART serkin_6 327 602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1165 680 MobiDBLite consensus disorder prediction 661 680 - -
Clacu05g1165 680 FunFam Putative receptor-like protein kinase 403 603 - -
Clacu05g1165 680 CDD STKc_IRAK 333 595 - -
Clacu05g1165 680 Pfam Protein kinase domain 330 593 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1165 680 PANTHER OS01G0750732 PROTEIN 171 638 IPR050885 -
Clacu05g1165 680 MobiDBLite consensus disorder prediction 213 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0114 Clacu-Chr1:1043148 Clacu05g1165 Clacu-Chr5:10719003 9.90E-47 dispersed
Clacu02g1146 Clacu-Chr2:22676755 Clacu05g1165 Clacu-Chr5:10719003 8.20E-24 dispersed
Clacu02g2300 Clacu-Chr2:36063327 Clacu05g1165 Clacu-Chr5:10719003 1.10E-52 dispersed
Clacu05g1165 Clacu-Chr5:10719003 Clacu05g2516 Clacu-Chr5:33270190 1.30E-63 dispersed
Clacu05g1165 Clacu-Chr5:10719003 Clacu05g1647 Clacu-Chr5:24519614 1.20E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73570 PF00069 Pkinase 3.40E-49 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1165 - - - 0.0