Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1171 ATGCCTGGGACTGGAAGTGTTGCTGTTCAACCTTTGGATTTGAGCGTACACATTCCATATCATTTCAGATGCCCCATTTCTCTTGAGCTCATGCGTGATCCTGTCACCGTCAGCACCGGTCAGACCTACGACCGTTCAAGTATAGAGTCATGGGTAGCCACCGGAAACACCACTTGTCCGGTTACTAGGGCTCCACTCACCGACTTCACGCTCATCCCTAACCATACACTGCGACGCTTAATCCAGGACTGGTGCGTTGCCAATCGGTCTTACGGGGTTGAGCGGATTCCGACTCCGAAGCAACCGGCGGAACCGTCTTTGGTTAGGTCTTTGCTTAGCCAAGCTTCGTCCAGATCGAGTGGTTCGAGTTTGAGAATCTCGGCTTTGCGTCGGTTGAAAGGACTCGCTCGTGACTCGGATAAGAATCGGTCTCTGATTTCATCGCTTAACGCTCGTGAAATTCTTCTGGATGTTGTTTTTTCGAATTTGGATTCGGATTCGGATTCGGATTCGTTTTCACCTGATTTGAGCCGCGAATCGCTTGCGCTTCTTGTGATGTTACCGCTCACGGAATCTGAGTGCGTTCTTGTTGCGTCTGATCCGCAACGGATTGGTTATCTGTCACATCTTCTATTTGATTCTTCGATTGAAGTCCGAATCAATGCTGCGGCGTTGATTGAAATTGTAATTGCCGGAACTCGAGCGTCGGAGCTTCGAAGCCAAATTTGTGGAATCGATGAATTGTTTGAAGGCGTTGTCGAAATCCTCAGAGATCCAACAGCGTATCCACGAGCACTCAAGGTCGGGGTTAAGGCTTTATTTGCTCTCTGTTTGGTGAAACAAACCAGGCACAAGGCAGTTTCCGCCGGCGCCGCCGAGATTATCATTGATCGATTTCCTGATTTGGAGAAGTATGATGCTGAGCGAGCCCTAGCTACGATTGAACTCATTTGCAGAATACCAACCGGTTGCGATGCGTTTGCAGCTCACGCGCTCACCGTTCCGCTTTTGGTGAAAGTCATTTTGAAGATCTCGGACAGAGCGACGGAGTCAGCCGTCGGAGCTCTGGTGTCGCTGTGTTCGGCATCGGAGGAGAATCGGCGGGAGGCGGTGGCGGCGGGGATTTTGACACAGTTGTTATTGCTGGTGCAAAGTGATTGTACGGAGCGAGTTAAACGGAAATCGCAGGTGTTGCTGAAGCTTCTTCGAGATTCATGGCCGCAGGAATCCGTTGGAAATTCCGACGATTATGCTTGCAGTGAAATTGTGGTACCCTTTTGTTAA 1284 50.08 MPGTGSVAVQPLDLSVHIPYHFRCPISLELMRDPVTVSTGQTYDRSSIESWVATGNTTCPVTRAPLTDFTLIPNHTLRRLIQDWCVANRSYGVERIPTPKQPAEPSLVRSLLSQASSRSSGSSLRISALRRLKGLARDSDKNRSLISSLNAREILLDVVFSNLDSDSDSDSFSPDLSRESLALLVMLPLTESECVLVASDPQRIGYLSHLLFDSSIEVRINAAALIEIVIAGTRASELRSQICGIDELFEGVVEILRDPTAYPRALKVGVKALFALCLVKQTRHKAVSAGAAEIIIDRFPDLEKYDAERALATIELICRIPTGCDAFAAHALTVPLLVKVILKISDRATESAVGALVSLCSASEENRREAVAAGILTQLLLLVQSDCTERVKRKSQVLLKLLRDSWPQESVGNSDDYACSEIVVPFC 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10775569 10776852 + ClG42_05g0117100.10 Clacu05g1171 248918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1171 427 CDD RING-Ubox_PUB 19 71 IPR045210 -
Clacu05g1171 427 Gene3D - 95 409 IPR011989 -
Clacu05g1171 427 SUPERFAMILY ARM repeat 107 402 IPR016024 -
Clacu05g1171 427 FunFam RING-type E3 ubiquitin transferase 12 94 - -
Clacu05g1171 427 ProSiteProfiles U-box domain profile. 17 91 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu05g1171 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 91 IPR013083 -
Clacu05g1171 427 SMART Ubox_2 21 84 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu05g1171 427 Pfam U-box domain 18 89 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu05g1171 427 PANTHER WDSAM1 PROTEIN 15 410 IPR045185 GO:0061630(InterPro)
Clacu05g1171 427 SUPERFAMILY RING/U-box 15 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0047 Clacu-Chr2:502951 Clacu05g1171 Clacu-Chr5:10775569 1.90E-43 dispersed
Clacu05g1171 Clacu-Chr5:10775569 Clacu05g1286 Clacu-Chr5:12855877 2.60E-54 dispersed
Clacu05g1171 Clacu-Chr5:10775569 Clacu10g1808 Clacu-Chr10:31752453 4.30E-49 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1171 - - - 0.0