Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1176 ATGGGCATGAGCTCAGTTGGAAGACTACGCGGTGAACAGACGTTAACACGGGTTGCGGCGTCTTGGTGGAGCGACGTGCAGACGACAACCACTGGTAAAGGTGAGGCTGCCGACATAGACCGTCACTGCCAACCGAAAAAAGTTACCGTTACCGGTTACCTACGGATTCCCGACTTGACCTCGTCAGATGGGCCCACAGTGCATTGCGATGGACGGTTGAGATTTCGTAGTGCAGTTTCATCTGCCCTCCAAACCCTCGCGTTTTTTTGTTCCCGTCTCTTCCTCCGTCGCTCTCTACGTCACGCGCCGCCCCGTTTTCCGGCGGCTGATCATTTCTCCACTCGGATCTTTCCGATTATCTATCCGGTGCAAGCTCAGCCTCAGAATGCTATTTCCGGCATCAATCCAGCGGCGAATGGTGGTGCCAATTTTGTGACTACTTCTTTGTACGTCGGAGATCTGGACCTGAATGTCACGGATTCGCAGCTTTATGACATATTTAATCAGGTGGGTCAGGTGGTTTCGGTTCGGGTTTGCCGAGACTTGACGACCCGGCGATCTCTCGGTTATGGTTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAACTTTACCCCTTTGAATGGAAAGCCTATTAGAGTTATGTATTCTCATCGTGACCCAAGCATTCGCAAAAGTGGGGCTGGAAATATATTTATTAAGAATTTAGACAAGGCAATTGACCACAAAGCTCTACATGATACATTTTCTGCATTTGGTAGTATCCTGTCTTGCAAAGTGGCGTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGACTCTGCTCAGAAAGCAATTGAGAAGCTGAACGGTATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCCTTTCTTCGTAAACAAGAAAGAGATGGTGTTGTTGACAAATCCAAATTTAACAATGTATTTGTAAAAAATCTTTCTGAGACAACTACTGAAGAGGATTTGAACAAGGCTTTTTCTGAATTTGGGACACTCACCAGTATTGTTGTGATGAGGGATGCTGATGGCAAATCAAGATGCTTTGGATTTGTTAATTTTGAAAATGCTGATGATGCTGCTAGGGCAGTTGATGCGCTCAACGGAAAGTTAGTTGATGATAAGGAGTGGTATGTTGGGAAAGCACAGAAAAAATCTGAAAGAGAAGTTGAATTAAAGCACCGGTTTGAACAAACTATGAAAGAGGCAGCGGACAAGTACCAGGGGGCAAATTTGTACATTAAAAATTTAGATGATAGCATTGGTGATGATAAGCTTAAGGAGCTGTTTGCTCCATTTGGCACAATCACCTCATGCAAGGTCATGCGCGACCCCAATGGTATAAGCAGAGGTTCTGGATTTGTTGCATTCTCAACCCCTGAAGAGGCATCTAGAGCTCTTATGGAGATGAATGGCAAAATGGTTGTTAGCAAACCATTGTATGTAGCACTTGCACAGCGGAAGGAAGATAGAAGAGCCAGATTGCAGGCTCAGTTCTCTCAAATCCGGCCAGTTGCCATGGCTGCTTCAGTTGCCCCTCGGATGCCAATATACCCTCCTGGTGGTCCAGGTATTGGACAGCAGTTGTTTTACGGTCAAGGTCCTCCTGCAATGATTCCTTCCCAAGGTGGCTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATAAGGCCTGGTGGAGGACCAATGCCAAATTTCTTTGTTCCAATGGTTCAGCAGGGTCAGCAAGGTCAGCGCCCTGGTGGCAGACGTGCAGGAGCTGTCCAGCAAACTCAGCAGCCTGTTCCAATGATGCAACAACAGATGTTGCCTAGAGGAGGACGTGTCTATCGCTACCCCCCTGGAAGAGGTTTGCCTGATGTTCCTATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTTCCATATGATATGGGAGGTATGCCATTGCGTGATGCGGCACACTCTCAACCTATCCCTATTGGTGCTCTGGCTTCTGCTCTTGCAAATGCTACTCCAGACCAACAGAGAACAATGCTGGGGGAGAATCTTTACCCGCTAGTGGAACAGTTGGAGCCGGACAATGCGGCCAAGGTAACTGGAATGCTTCTGGAGATGGACCAGACTGAGGTTTTGCATTTACTAGAGTCCCCAGAGGCTTTGAAGGCCAAAGTAGCCGAAGCTATGGAGGTTTTGAGGAATGTTGCTGCAGCTCAGCAGCAGCAAGCTGGCAATGCAGCGGATCAGCTAGCTTCTCTGTCGCTGACCGAGAACCTCGTGTCATGA 2316 47.67 MGMSSVGRLRGEQTLTRVAASWWSDVQTTTTGKGEAADIDRHCQPKKVTVTGYLRIPDLTSSDGPTVHCDGRLRFRSAVSSALQTLAFFCSRLFLRRSLRHAPPRFPAADHFSTRIFPIIYPVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEDSAQKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVAMAASVAPRMPIYPPGGPGIGQQLFYGQGPPAMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGQRPGGRRAGAVQQTQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGMPLRDAAHSQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAAQQQQAGNAADQLASLSLTENLVS 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10813435 10820324 - ClG42_05g0117600.10 Clacu05g1176 248923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1176 771 FunFam Polyadenylate-binding protein 133 235 - -
Clacu05g1176 771 SMART rrm1_1 430 502 IPR000504 GO:0003723(InterPro)
Clacu05g1176 771 SMART rrm1_1 236 308 IPR000504 GO:0003723(InterPro)
Clacu05g1176 771 SMART rrm1_1 148 221 IPR000504 GO:0003723(InterPro)
Clacu05g1176 771 SMART rrm1_1 327 399 IPR000504 GO:0003723(InterPro)
Clacu05g1176 771 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 148 743 IPR006515 GO:0003723(InterPro)
Clacu05g1176 771 Gene3D - 412 514 IPR012677 -
Clacu05g1176 771 CDD RRM2_I_PABPs 233 309 IPR045305 -
Clacu05g1176 771 FunFam Polyadenylate-binding protein 666 749 - -
Clacu05g1176 771 SUPERFAMILY RNA-binding domain, RBD 147 316 IPR035979 GO:0003676(InterPro)
Clacu05g1176 771 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 147 225 IPR000504 GO:0003723(InterPro)
Clacu05g1176 771 CDD RRM1_I_PABPs 148 227 IPR034364 -
Clacu05g1176 771 Gene3D - 666 747 - -
Clacu05g1176 771 SUPERFAMILY PABC (PABP) domain 613 763 IPR036053 GO:0003723(InterPro)
Clacu05g1176 771 Gene3D - 236 308 IPR012677 -
Clacu05g1176 771 PANTHER RNA BINDING PROTEIN 142 328 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Clacu05g1176 771 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 670 747 IPR002004 GO:0003723(InterPro)
Clacu05g1176 771 FunFam Polyadenylate-binding protein 236 309 - -
Clacu05g1176 771 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 235 307 IPR000504 GO:0003723(InterPro)
Clacu05g1176 771 FunFam Polyadenylate-binding protein 316 411 - -
Clacu05g1176 771 Pfam RNA recognition motif 149 219 IPR000504 GO:0003723(InterPro)
Clacu05g1176 771 Pfam RNA recognition motif 328 396 IPR000504 GO:0003723(InterPro)
Clacu05g1176 771 Pfam RNA recognition motif 431 499 IPR000504 GO:0003723(InterPro)
Clacu05g1176 771 Pfam RNA recognition motif 237 305 IPR000504 GO:0003723(InterPro)
Clacu05g1176 771 SMART poly_2 682 745 IPR002004 GO:0003723(InterPro)
Clacu05g1176 771 SMART rrm2_1 236 308 IPR003954 GO:0003676(InterPro)
Clacu05g1176 771 SMART rrm2_1 327 399 IPR003954 GO:0003676(InterPro)
Clacu05g1176 771 SMART rrm2_1 148 221 IPR003954 GO:0003676(InterPro)
Clacu05g1176 771 SMART rrm2_1 430 502 IPR003954 GO:0003676(InterPro)
Clacu05g1176 771 Pfam Poly-adenylate binding protein, unique domain 677 742 IPR002004 GO:0003723(InterPro)
Clacu05g1176 771 SUPERFAMILY RNA-binding domain, RBD 326 510 IPR035979 GO:0003676(InterPro)
Clacu05g1176 771 MobiDBLite consensus disorder prediction 591 612 - -
Clacu05g1176 771 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 429 506 IPR000504 GO:0003723(InterPro)
Clacu05g1176 771 FunFam Polyadenylate-binding protein 412 517 - -
Clacu05g1176 771 Gene3D - 311 411 IPR012677 -
Clacu05g1176 771 Gene3D - 137 235 IPR012677 -
Clacu05g1176 771 CDD RRM4_I_PABPs 428 506 - -
Clacu05g1176 771 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 326 403 IPR000504 GO:0003723(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0835 Clacu-Chr5:7213685 Clacu05g1176 Clacu-Chr5:10813435 4.40E-29 dispersed
Clacu05g1176 Clacu-Chr5:10813435 Clacu08g0866 Clacu-Chr8:18741272 1.10E-188 dispersed
Clacu08g1259 Clacu-Chr8:22588765 Clacu05g1176 Clacu-Chr5:10813435 3.10E-08 transposed
Clacu09g1614 Clacu-Chr9:28238228 Clacu05g1176 Clacu-Chr5:10813435 3.80E-08 transposed
Clacu02g0646 Clacu-Chr2:6432224 Clacu05g1176 Clacu-Chr5:10813435 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1176 K13126 - csv:101219802 1198.34