Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1182 ATGGCAATGCATCGGTACGTACAAGCTGATGATGATGCCCAAACCCATTTGTTTCCGCTCGATTCTTTGTTTTGTGAAGAGGAGAAATGGGAGGAGGAGGAGGAGCAGGAGGAAGATGTAGCTGAGTTAGAACAAACCCATTTCTCTTCTTTGGGATTTTTGGACGAACATCTCTCCGGGGAAGATGAACGGCTTCTCTCCATGTTGTCTAAGGAAACAGAGCAGCTGAAACAGAGCAATCTCCACCTTGAAGCTTTGTTGATGGATCCTTCTATTTCTGCTGCTCGTTCTTCAGCTGTGGACTGGATGCTCAAAGTTCAATCCCATTATGGGTTTTCAACTCTCACTGCCATTTTGGCTGTTGCTTATTTTGACAGATTCCTCCTGAGCTTCCATTTTAAGAGTGACAAGCCGTGGATGAACCAGCTTGTGGCTGTCACTTGCCTCTCTTTGGCGGCTAAAGTGGAGGAGATTCAAGTTCCTCTTCTCTTGGACCTTCAAGTAGAGGATGCTAAGTATGTGTTTGAGGCCAAAACCATTCAGAGAATGGAGCTTCTAGTGCTCTCAACTCTTCAATGGAGGATGCATTTGGTGACTCCATATTCTTTTCTTGATCACATTGTAAAGAGGCTTGGGTTAAAGAACAATCTTCACTTGGAGTTTTTCAGGCGTTCTGAGTATCTTCTCCTCTCTCTACTTTCAGATTCAAGATTTGTGGGTTATCTCCCATCTGTCTTGGCAACTGCAACAATGATGGAAGTGATAGATCAGATTGAGCCTCATAAGACATTGGAGCACCAAGATAAGCTTCTGGGTGTCCTCAAAATGAACAAGGAAAAGGTGCAATGCTGTTACAATCTTGTTGTGGAGCATTCAAAGGCCTATTCCAGTGGCTTTTATCATCCCATCAACTCCCACAAGCGCAAGCATGAACAGCAAGCTCCTGATAGCCCAAGTGGTGTGATTGATGCTGGTTTCAGTTCAGACAGCTCCAATGATTCTTGGGCATTTAGAGCAACATCAGTTTGTTCATCACCTGAACCTTCTTTCAAGAAGAGCAAATCTGAAGAGTCAAAGATGAAATTTCATTCTCTTAACAGGGCCTTTCTGGACATTGTTGGCAGCCCTTCTTGA 1134 44.09 MAMHRYVQADDDAQTHLFPLDSLFCEEEKWEEEEEQEEDVAELEQTHFSSLGFLDEHLSGEDERLLSMLSKETEQLKQSNLHLEALLMDPSISAARSSAVDWMLKVQSHYGFSTLTAILAVAYFDRFLLSFHFKSDKPWMNQLVAVTCLSLAAKVEEIQVPLLLDLQVEDAKYVFEAKTIQRMELLVLSTLQWRMHLVTPYSFLDHIVKRLGLKNNLHLEFFRRSEYLLLSLLSDSRFVGYLPSVLATATMMEVIDQIEPHKTLEHQDKLLGVLKMNKEKVQCCYNLVVEHSKAYSSGFYHPINSHKRKHEQQAPDSPSGVIDAGFSSDSSNDSWAFRATSVCSSPEPSFKKSKSEESKMKFHSLNRAFLDIVGSPS 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10889775 10891206 + ClG42_05g0118200.10 Clacu05g1182 248929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1182 377 PANTHER CYCLINS 47 290 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Clacu05g1182 377 SMART cyclin_7 101 189 IPR013763 -
Clacu05g1182 377 SMART cyclin_7 202 290 IPR013763 -
Clacu05g1182 377 SMART Cyclin_C_2 198 333 IPR004367 -
Clacu05g1182 377 CDD CYCLIN_AtCycD-like_rpt2 198 288 - -
Clacu05g1182 377 Gene3D - 78 196 - -
Clacu05g1182 377 CDD CYCLIN_AtCycD-like_rpt1 95 193 - -
Clacu05g1182 377 FunFam CYCLIN D32 197 286 - -
Clacu05g1182 377 SUPERFAMILY Cyclin-like 62 196 IPR036915 -
Clacu05g1182 377 Gene3D - 67 286 - -
Clacu05g1182 377 FunFam D3-type cyclin 89 196 - -
Clacu05g1182 377 Pfam Cyclin, N-terminal domain 69 195 IPR006671 -
Clacu05g1182 377 ProSitePatterns Cyclins signature. 96 127 IPR048258 -
Clacu05g1182 377 Pfam Cyclin, C-terminal domain 198 311 IPR004367 -
Clacu05g1182 377 MobiDBLite consensus disorder prediction 306 332 - -
Clacu05g1182 377 SUPERFAMILY Cyclin-like 199 260 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1182 Clacu-Chr5:10889775 Clacu05g2220 Clacu-Chr5:30740319 1.80E-67 dispersed
Clacu01g1776 Clacu-Chr1:29953695 Clacu05g1182 Clacu-Chr5:10889775 1.10E-71 wgd
Clacu02g0668 Clacu-Chr2:6681708 Clacu05g1182 Clacu-Chr5:10889775 1.60E-68 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1182 K14505 - csv:101221213 634.795