Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1185 ATGATGCACACCATGAAACCATCGCAACTTCTGGCTCTGTTTTCCACCTTCACTTTCTGTTTCCCCTGTCTTGCTCTCAACAGCGATGGCATTCTCTTGATTTCTCTCAAACACTCCATTCTCGGCGATCCTTTGTCTGTTTTCGCTAATTGGAATTTCTACGACGACACTCCCTGTTCCTGGCGTGGAGTTACCTGCACCGACCTCCGAGACTATGGCGGCGGATGGTCGGATTTCCTCAGAGTTACTGCCCTCTCCCTCCCTGGCAGCCAGCTTCTGGGTTCCATTCCTGATGAGCTTGGAAGGATCGAACACCTTCGTCTTCTCGATCTTTCCGGTAATTTCTTTAATGGGTCTCTTCCCACTTCCATTTTCAATGCTTCTGAGCTTCAGATTCTTTCTCTTTCCAACAATGTTATCTCCGGCGAGTTGCCGGCGGACATTGGGGGTTTGAAGAGTCTTCAGGTTTTGAATCTCTCTGATAATGCGTTGGCCGGAAAAGTCCCGGGAAATCTCACTGCTCTGAAGAATCTAACTGTTGTTTCTCTGAGGAGTAATTACTTCACCGGAGAGATTCCGGGGAATTTCAGTTCGGTTGAGGTTTTGGATCTGTCTTCCAATTTGTTCAATGGATCTTTGCCGGCTGATTTTGGTGGGGAGAAGCTGCGGTATTTGAACTTCTCTTACAATAAAATTTCAAGTCCGATTCCGCTGGATTTCGCCAAGAGGATTCCAATGAATGCGACTATGGATCTTTCTTTCAATAATCTCACCGGAGCAATTCCTCAGTCGATTGCTCTGCTCAGCCAGAAAACAGAGGCATTCGCCGGAAATGAAGATCTCTGTGGGAAGCCATTGAAGCACCTCTGTTCAATTCCTTCTTCACTCACAACCCCCCCAAATGTTTCTGAAAGTTCATCTTCGTCTCCAGCAATCGCCGCCATACCCAAAACAATCGGCTCTGTTCCGGCAACACAGTCCCCCCGAGGTCCAAACGGGACACAAACTTCTCAGCCTCAAAACGCCATGAAACCCATCACAATAGCTGCAATAGCAGTCGGAGACATCGCCGGAATCGCCATTCTCGCCGTTGTGATTCTCTACGTCTACCACCACCGGAAACGTAAAAACCCCAACTCCAAAACCCCTAAATCCACCGAGAAGAAGCCGCCGATTGACTCAGAACAAGACCCTCAAACTAACCACAAAAAATCCTCATCAGTGTTATTCTGTTTAGCCAACAAAGGAGAAGAGACATCGGAGGCGACGAGTTCTTCCGACGGCGAAGAACAGAGAGAGAAACCCGGAACAACCCACGGCGGAGAGAATAGAGACAGTAAGAAAAACGGCGTGCTGGTGACGGTGGACGGAGAAACAGAGCTGGAATTAGAGACTTTATTAAAGGCATCGGCGTATATACTTGGAGCGAGCGGGGGGAGCATCGTGTACAAGGCGGTGCTGGAGGACGGTACCGCGTTCGCCGTCAGAAGGATCGGCGACGTCAGCGTGGAGAAATTGAGGGATTTTGAGAGCCAAGTGAGAGCCATTGCTAAGGTTCGACATCAAAATTTGGTGAAAATTCGAGGGTTCTTTTGGGGAGAAGATGAGAAGCTCATCATCTATGATTATGTCTCCAATGGCTGCCTTTCAACTTCCCTTCACAGAAAACCGAGTTCATCGTCTTCTTCCCAGAGCCATCTATCATTTGAAGTCCGAGTGAAAATCGCGAGAGGAATCGCCCGAGGACTGGCCTTCATCCACGACAAGAAGCACATCCATGGCAACCTCAAGCCTTCCAACATTCTCTTGAATTCCGAAATGGAGCCCTTAATCGCCGATCTCGGCCTGGACAAGCTCCTCTCCGGCAGATCCAAAATCGCAATCGCCTCCAGTTCTGCCCGAAACTTCGGCAGCCACAGATCCACGCCCAATCGTGAGTACCAAGACGCCAACGGCGGAAGCCCGTCGGTAAGCCTGGGATCGGCGTACCAGGCGCCGGAATCGCTTAAGAATGTGAAAGCGAGCCCTAAATGGGATGTGTATTCGTTCGGGGTGATTCTGCTGGAGGTTGTGAGCGGGAAGATTGTGACGGAGAGGGAATTAGGCGGCGGTGAAGAGGAGGGGCGGATTAAGAAAATGGTGGATTTGGCGATTAGAGGGGAAGTGGAAGGGAAAGAAGAGGCGGTAATGGGGATTTTTAGATTAGGGTTTAGCTGTGTTAGTTTTTTGCCTCAAAAAAGACCCACCATGAAAGAGGCTCTCCAAGTTCTTGACAAAATTTCTTCCATCATTTCTTCTTCTAACACCTAA 2310 49.26 MMHTMKPSQLLALFSTFTFCFPCLALNSDGILLISLKHSILGDPLSVFANWNFYDDTPCSWRGVTCTDLRDYGGGWSDFLRVTALSLPGSQLLGSIPDELGRIEHLRLLDLSGNFFNGSLPTSIFNASELQILSLSNNVISGELPADIGGLKSLQVLNLSDNALAGKVPGNLTALKNLTVVSLRSNYFTGEIPGNFSSVEVLDLSSNLFNGSLPADFGGEKLRYLNFSYNKISSPIPLDFAKRIPMNATMDLSFNNLTGAIPQSIALLSQKTEAFAGNEDLCGKPLKHLCSIPSSLTTPPNVSESSSSSPAIAAIPKTIGSVPATQSPRGPNGTQTSQPQNAMKPITIAAIAVGDIAGIAILAVVILYVYHHRKRKNPNSKTPKSTEKKPPIDSEQDPQTNHKKSSSVLFCLANKGEETSEATSSSDGEEQREKPGTTHGGENRDSKKNGVLVTVDGETELELETLLKASAYILGASGGSIVYKAVLEDGTAFAVRRIGDVSVEKLRDFESQVRAIAKVRHQNLVKIRGFFWGEDEKLIIYDYVSNGCLSTSLHRKPSSSSSSQSHLSFEVRVKIARGIARGLAFIHDKKHIHGNLKPSNILLNSEMEPLIADLGLDKLLSGRSKIAIASSSARNFGSHRSTPNREYQDANGGSPSVSLGSAYQAPESLKNVKASPKWDVYSFGVILLEVVSGKIVTERELGGGEEEGRIKKMVDLAIRGEVEGKEEAVMGIFRLGFSCVSFLPQKRPTMKEALQVLDKISSIISSSNT 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10929788 10934017 - ClG42_05g0118500.10 Clacu05g1185 248932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1185 769 MobiDBLite consensus disorder prediction 425 451 - -
Clacu05g1185 769 Gene3D Ribonuclease Inhibitor 196 292 IPR032675 -
Clacu05g1185 769 MobiDBLite consensus disorder prediction 635 656 - -
Clacu05g1185 769 Pfam Leucine rich repeat 105 164 IPR001611 GO:0005515(InterPro)
Clacu05g1185 769 Gene3D Phosphorylase Kinase; domain 1 438 543 - -
Clacu05g1185 769 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 26 191 - -
Clacu05g1185 769 SUPERFAMILY Protein kinase-like (PK-like) 473 760 IPR011009 -
Clacu05g1185 769 Pfam Protein kinase domain 474 755 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1185 769 MobiDBLite consensus disorder prediction 380 400 - -
Clacu05g1185 769 PANTHER OS05G0588300 PROTEIN 175 761 IPR050994 -
Clacu05g1185 769 MobiDBLite consensus disorder prediction 321 340 - -
Clacu05g1185 769 FunFam Leucine-rich repeat receptor-like protein kinase 198 292 - -
Clacu05g1185 769 Pfam Leucine rich repeat N-terminal domain 26 67 IPR013210 -
Clacu05g1185 769 SUPERFAMILY L domain-like 26 288 - -
Clacu05g1185 769 Gene3D Ribonuclease Inhibitor 26 195 IPR032675 -
Clacu05g1185 769 Gene3D Transferase(Phosphotransferase) domain 1 544 768 - -
Clacu05g1185 769 MobiDBLite consensus disorder prediction 375 451 - -
Clacu05g1185 769 Pfam Leucine Rich Repeat 177 198 IPR001611 GO:0005515(InterPro)
Clacu05g1185 769 Pfam Leucine Rich Repeat 221 241 IPR001611 GO:0005515(InterPro)
Clacu05g1185 769 Pfam Leucine Rich Repeat 199 218 IPR001611 GO:0005515(InterPro)
Clacu05g1185 769 ProSiteProfiles Leucine-rich repeat profile. 221 242 IPR001611 GO:0005515(InterPro)
Clacu05g1185 769 ProSiteProfiles Protein kinase domain profile. 468 764 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0829 Clacu-Chr2:9648005 Clacu05g1185 Clacu-Chr5:10929788 1.70E-149 dispersed
Clacu05g1185 Clacu-Chr5:10929788 Clacu11g1567 Clacu-Chr11:26797546 2.20E-59 dispersed
Clacu05g1185 Clacu-Chr5:10929788 Clacu05g2440 Clacu-Chr5:32604044 1.60E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73571 PF00069 Pkinase 1.90E-30 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1185 - - - 0.0