Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1190 ATGGGTAGCATTGAAACAGACAGAACTGTAACAGGATTCGCCGCCAAAGACCCATCTGGGATTCTCTCTCCTTACACTTACACTCTCAGAAACACCGGCCCCCAAGATGTTTTCATCAAAGTCATTTGCTGTGGAATCTGCCACTCTGATCTTCACCAAATCAAGAATGAACTCGGCATGTCCAATTACCCCATGGTTCCTGGACACGAGGTGGTCGGGGAAGTGGTGGAGGTTGGATCCGAAGTGGATCGATTCAGAGTTGGGGAGATGGTCGGAGTTGGGTGTATTCTTGGATCATGTTCCAGTTGTAATCCTTGTAATTCCGATAAGGAGCAGTACTGTAACAAGAGAATCTGGACCTATAACGACGTGTATCACGACGGCCGCCCCACCCAAGGCGGTTTCTCCTCCGCCATGGTTGTCCACCAAAAGTTTGTGGTGAGAATCCCAGATGGGATGTCGCCGGAGCAGGCGGCGCCGCTTCTTTGCGCGGGAGTGACGGTGTATAGCCCGCTAAGTCACTTTGGACTGAAACAGAGTGGGCTAAGAGGCGGAATTTTGGGGCTGGGTGGCGTTGGGCATATGGGTGTCAAAGTGGCAAAAGCTTTGGGCCACCACGTGACGGTGATAAGCTCGTCGGAGAAGAAGAGGGAGGAGGCTCTGGAACATCTCGGTGCCGACGAGTACTTGGTCAGCTCCGACAACACTCAAATGGAACGAGCCATTGACTCGCTCGATTACATTATCGACACCGTCCCTGTTTTTCATCCGCTCGAGCCGTATCTCTCACTGCTAAAACTCGACGGAAAATTGATTTTGATGGGTGTCATTAATACCCCATTGCAATTCGTTTCCCCTCTCCTTATGCTGGGGAGGAAGACGATTACAGGGAGCTTCATCGGAAGCATGACAGAGACACAAGAAGTATTGGATTTTTTTAAAGAGAAGGAGCTGAGCTCCATGATTGAAGTGATAAAGCTTGATTACATAAACAAGGCTTTCGAGAGGTTGGAGAAGAACGATGTTAGATACAGGTTCGTCGTCGACATTGCCGGAAGTAAGATGCCTCAGTGA 1074 49.81 MGSIETDRTVTGFAAKDPSGILSPYTYTLRNTGPQDVFIKVICCGICHSDLHQIKNELGMSNYPMVPGHEVVGEVVEVGSEVDRFRVGEMVGVGCILGSCSSCNPCNSDKEQYCNKRIWTYNDVYHDGRPTQGGFSSAMVVHQKFVVRIPDGMSPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKVAKALGHHVTVISSSEKKREEALEHLGADEYLVSSDNTQMERAIDSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFVSPLLMLGRKTITGSFIGSMTETQEVLDFFKEKELSSMIEVIKLDYINKAFERLEKNDVRYRFVVDIAGSKMPQ 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10977744 10979220 - ClG42_05g0119000.10 Clacu05g1190 248937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1190 357 Gene3D - 13 350 - -
Clacu05g1190 357 SUPERFAMILY GroES-like 17 181 IPR011032 -
Clacu05g1190 357 Gene3D - 164 320 - -
Clacu05g1190 357 FunFam Putative cinnamyl alcohol dehydrogenase 6 321 350 - -
Clacu05g1190 357 FunFam probable cinnamyl alcohol dehydrogenase 13 170 - -
Clacu05g1190 357 PANTHER ALDEHYDE REDUCTASE 9 351 IPR047109 GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER)
Clacu05g1190 357 SMART PKS_ER_names_mod 20 348 IPR020843 GO:0016491(InterPro)
Clacu05g1190 357 CDD CAD1 11 349 IPR047109 GO:0016616(InterPro)
Clacu05g1190 357 Pfam Alcohol dehydrogenase GroES-like domain 33 151 IPR013154 -
Clacu05g1190 357 FunFam Cinnamyl alcohol dehydrogenase 164 320 - -
Clacu05g1190 357 Pfam Zinc-binding dehydrogenase 191 314 IPR013149 -
Clacu05g1190 357 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 153 318 IPR036291 -
Clacu05g1190 357 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0121 Clacu-Chr1:1160681 Clacu05g1190 Clacu-Chr5:10977744 3.40E-84 transposed
Clacu01g1893 Clacu-Chr1:31070339 Clacu05g1190 Clacu-Chr5:10977744 4.50E-108 transposed
Clacu05g1707 Clacu-Chr5:25869105 Clacu05g1190 Clacu-Chr5:10977744 1.30E-99 transposed
Clacu05g2730 Clacu-Chr5:34810960 Clacu05g1190 Clacu-Chr5:10977744 2.80E-07 transposed
Clacu09g1937 Clacu-Chr9:34235931 Clacu05g1190 Clacu-Chr5:10977744 5.00E-10 transposed
Clacu02g0676 Clacu-Chr2:6824667 Clacu05g1190 Clacu-Chr5:10977744 2.60E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1190 K00083 - csv:101222395 642.499