Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1216 ATGCCCTTAGAAGGTATTTTTATTGAACCTTCTTCAACCTCACTTCCTGATCTCTCTCTTCAAATCAGCCCTCCAAATGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCTTATTCTTCAATTAGAACCCTCAACCATGGATTTTCAGAAAAAAGTTTTGATCTTTTGATTCAAAGAAACTCCCAATTCCAAAATAATATTTCAAATGACCCTCGAACTCAAATTGAGCTCTCTCTAGGAACCACCAACAACAACAATTCCTTCAGTGGAGCAACACTGCATCCACCCCCACCGCTCCCGCATCTCCGGGGGCTTTCGACGTTCGATGTATCATCAGACGGTTTACGACCGATCAAAGGGATTCCGGTGTATCACAACCGTCCATTTCCATTTTTGGGTGTGGATCAAAAAGATCACCATTACTTTCACCAATTTCCATCAGCTTGCTTCTTCCCAAATTACTCGAACACGAACACAAACGGAAGCAGCGGCGGAGGAGGAGTGGTTGAAATGGGTTATCATCATCATCATCATCGAGGCAGCGGAGTTGGAGGAAATAATAATAATAATAATAATAATAATAATAATAATAATTGTTCAGCGAGGTTCAACAATGGGGTTGTTTCAGTAGAAGGAATTAAATGTTTGAATAATAATGTTAATAGTAATAGTAGTAATGCAGCTTCTTCTTCTTCTTCTGATGTTTGTTCTCATGGGATGATGATGATGAGATCCAGATTTTTGCAGAAGCTTCCTGCAAAACGAAGCATGAGAGCTCCTAGAATGAGATGGACTACCTCCTTACATGCTCGCTTCGTTCATGCTGTCGAACATCTCGGCGGCCATGAAAGAGCAACACCAAAGTCAGTTCTTGAGCTTATGGATGTTAAGGATCTAACATTAGCTCATGTCAAAAGCCATTTACAGATGTATCGAACTGTTAAGACCACTGACAAACCTGCAGCTTCCTCAGGCCAATCGGATGGTTCGGGAGAGGATGATGCATCTCCTACAATGGACACAACCAGAGGGGATCATGGTGCCAAGCAATTTTCCGATCAAAGAGCTCCGCCCGACCGGTCCGGCCAGCCGCTGCCAGAGTTGGAATTTGGCTCCTCCACACTTTGGTCTAATTCTTCAAGAGATGTTTGGCCACAAAGAAACTCTAATGACATGGATGTCATAACACCAACTTTCATGTCTACACAACAAAAATCCATGCACCAAATTCAGGAATGTGATTCAGGTGTAATGAAGAGATACAATTCAGAATTCAAGAAACCAAGCTTGGAGTTCAGATTAGGCAGAGCAGAGTGGGATGTGAAACAAGACTAA 1347 42.02 MPLEGIFIEPSSTSLPDLSLQISPPNVSSSSSSSSSSSSSSYSSIRTLNHGFSEKSFDLLIQRNSQFQNNISNDPRTQIELSLGTTNNNNSFSGATLHPPPPLPHLRGLSTFDVSSDGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYSNTNTNGSSGGGGVVEMGYHHHHHRGSGVGGNNNNNNNNNNNNNCSARFNNGVVSVEGIKCLNNNVNSNSSNAASSSSSDVCSHGMMMMRSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGQSDGSGEDDASPTMDTTRGDHGAKQFSDQRAPPDRSGQPLPELEFGSSTLWSNSSRDVWPQRNSNDMDVITPTFMSTQQKSMHQIQECDSGVMKRYNSEFKKPSLEFRLGRAEWDVKQD 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11300020 11306339 - ClG42_05g0121600.10 Clacu05g1216 248963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1216 448 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 10 446 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
Clacu05g1216 448 FunFam Myb family transcription factor 262 320 - -
Clacu05g1216 448 MobiDBLite consensus disorder prediction 178 202 - -
Clacu05g1216 448 NCBIfam myb-like DNA-binding domain, SHAQKYF class 264 317 IPR006447 GO:0003677(InterPro)
Clacu05g1216 448 MobiDBLite consensus disorder prediction 318 393 - -
Clacu05g1216 448 MobiDBLite consensus disorder prediction 186 202 - -
Clacu05g1216 448 MobiDBLite consensus disorder prediction 318 341 - -
Clacu05g1216 448 MobiDBLite consensus disorder prediction 12 40 - -
Clacu05g1216 448 Gene3D - 263 320 - -
Clacu05g1216 448 MobiDBLite consensus disorder prediction 371 393 - -
Clacu05g1216 448 SUPERFAMILY Homeodomain-like 261 317 IPR009057 -
Clacu05g1216 448 MobiDBLite consensus disorder prediction 1 40 - -
Clacu05g1216 448 Pfam Myb-like DNA-binding domain 265 316 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0872 Clacu-Chr1:9986910 Clacu05g1216 Clacu-Chr5:11300020 9.00E-33 dispersed
Clacu04g1095 Clacu-Chr4:25188860 Clacu05g1216 Clacu-Chr5:11300020 2.10E-33 dispersed
Clacu05g1216 Clacu-Chr5:11300020 Clacu10g0135 Clacu-Chr10:1630157 3.60E-38 dispersed
Clacu05g1216 Clacu-Chr5:11300020 Clacu09g1167 Clacu-Chr9:11281499 5.70E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47685 PF00249 Myb_DNA-binding 2.10E-05 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1216 - - - 0.0