Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1216 ATGCCCTTAGAAGGTATTTTTATTGAACCTTCTTCAACCTCACTTCCTGATCTCTCTCTTCAAATCAGCCCTCCAAATGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCTTATTCTTCAATTAGAACCCTCAACCATGGATTTTCAGAAAAAAGTTTTGATCTTTTGATTCAAAGAAACTCCCAATTCCAAAATAATATTTCAAATGACCCTCGAACTCAAATTGAGCTCTCTCTAGGAACCACCAACAACAACAATTCCTTCAGTGGAGCAACACTGCATCCACCCCCACCGCTCCCGCATCTCCGGGGGCTTTCGACGTTCGATGTATCATCAGACGGTTTACGACCGATCAAAGGGATTCCGGTGTATCACAACCGTCCATTTCCATTTTTGGGTGTGGATCAAAAAGATCACCATTACTTTCACCAATTTCCATCAGCTTGCTTCTTCCCAAATTACTCGAACACGAACACAAACGGAAGCAGCGGCGGAGGAGGAGTGGTTGAAATGGGTTATCATCATCATCATCATCGAGGCAGCGGAGTTGGAGGAAATAATAATAATAATAATAATAATAATAATAATAATAATTGTTCAGCGAGGTTCAACAATGGGGTTGTTTCAGTAGAAGGAATTAAATGTTTGAATAATAATGTTAATAGTAATAGTAGTAATGCAGCTTCTTCTTCTTCTTCTGATGTTTGTTCTCATGGGATGATGATGATGAGATCCAGATTTTTGCAGAAGCTTCCTGCAAAACGAAGCATGAGAGCTCCTAGAATGAGATGGACTACCTCCTTACATGCTCGCTTCGTTCATGCTGTCGAACATCTCGGCGGCCATGAAAGAGCAACACCAAAGTCAGTTCTTGAGCTTATGGATGTTAAGGATCTAACATTAGCTCATGTCAAAAGCCATTTACAGATGTATCGAACTGTTAAGACCACTGACAAACCTGCAGCTTCCTCAGGCCAATCGGATGGTTCGGGAGAGGATGATGCATCTCCTACAATGGACACAACCAGAGGGGATCATGGTGCCAAGCAATTTTCCGATCAAAGAGCTCCGCCCGACCGGTCCGGCCAGCCGCTGCCAGAGTTGGAATTTGGCTCCTCCACACTTTGGTCTAATTCTTCAAGAGATGTTTGGCCACAAAGAAACTCTAATGACATGGATGTCATAACACCAACTTTCATGTCTACACAACAAAAATCCATGCACCAAATTCAGGAATGTGATTCAGGTGTAATGAAGAGATACAATTCAGAATTCAAGAAACCAAGCTTGGAGTTCAGATTAGGCAGAGCAGAGTGGGATGTGAAACAAGACTAA 1347 42.02 MPLEGIFIEPSSTSLPDLSLQISPPNVSSSSSSSSSSSSSSYSSIRTLNHGFSEKSFDLLIQRNSQFQNNISNDPRTQIELSLGTTNNNNSFSGATLHPPPPLPHLRGLSTFDVSSDGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYSNTNTNGSSGGGGVVEMGYHHHHHRGSGVGGNNNNNNNNNNNNNCSARFNNGVVSVEGIKCLNNNVNSNSSNAASSSSSDVCSHGMMMMRSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGQSDGSGEDDASPTMDTTRGDHGAKQFSDQRAPPDRSGQPLPELEFGSSTLWSNSSRDVWPQRNSNDMDVITPTFMSTQQKSMHQIQECDSGVMKRYNSEFKKPSLEFRLGRAEWDVKQD 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11300020 11306339 - ClG42_05g0121600.10 Clacu05g1216 248963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1216 448 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 10 446 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
Clacu05g1216 448 FunFam Myb family transcription factor 262 320 - -
Clacu05g1216 448 MobiDBLite consensus disorder prediction 178 202 - -
Clacu05g1216 448 NCBIfam myb-like DNA-binding domain, SHAQKYF class 264 317 IPR006447 GO:0003677(InterPro)
Clacu05g1216 448 MobiDBLite consensus disorder prediction 318 393 - -
Clacu05g1216 448 MobiDBLite consensus disorder prediction 186 202 - -
Clacu05g1216 448 MobiDBLite consensus disorder prediction 318 341 - -
Clacu05g1216 448 MobiDBLite consensus disorder prediction 12 40 - -
Clacu05g1216 448 Gene3D - 263 320 - -
Clacu05g1216 448 MobiDBLite consensus disorder prediction 371 393 - -
Clacu05g1216 448 SUPERFAMILY Homeodomain-like 261 317 IPR009057 -
Clacu05g1216 448 MobiDBLite consensus disorder prediction 1 40 - -
Clacu05g1216 448 Pfam Myb-like DNA-binding domain 265 316 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1216 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0872 Clacu-Chr1:9986910 Clacu05g1216 Clacu-Chr5:11300020 9.00E-33 dispersed
Clacu04g1095 Clacu-Chr4:25188860 Clacu05g1216 Clacu-Chr5:11300020 2.10E-33 dispersed
Clacu05g1216 Clacu-Chr5:11300020 Clacu10g0135 Clacu-Chr10:1630157 3.60E-38 dispersed
Clacu05g1216 Clacu-Chr5:11300020 Clacu09g1167 Clacu-Chr9:11281499 5.70E-44 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g0372 . 12 302 G2-like Transcription Factor Family AT3G24120 63.1 2.5e-88 322.4
Clacu02g1922 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Clacu07g0217 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.7e-40 161.0
Clacu09g2308 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Clacu01g2176 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Clacu05g1216 . 246 446 G2-like Transcription Factor Family AT5G16560 56.5 7.9e-45 178.3
Clacu09g1167 . 199 403 G2-like Transcription Factor Family AT5G16560 51.7 7.0e-41 165.2
Clacu05g2133 . 1 167 G2-like Transcription Factor Family AT5G42630 58.3 7.3e-40 161.0
Clacu08g1709 . 50 136 G2-like Transcription Factor Family AT5G42630 83.9 1.3e-36 150.2
Clacu05g2494 . 19 256 G2-like Transcription Factor Family AT1G25550 55.4 5.5e-53 204.9
Clacu08g0656 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 6.0e-52 201.4
Clacu03g0131 . 1 269 G2-like Transcription Factor Family AT3G46640 51.7 3.2e-60 229.2
Clacu04g0629 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.1e-74 275.0
Clacu10g1634 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 6.8e-69 257.7
Clacu05g0372 . 12 302 G2-like Transcription Factor Family AT3G24120 63.1 2.5e-88 322.4
Clacu02g1922 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Clacu07g0217 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.7e-40 161.0
Clacu09g2308 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Clacu01g2176 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Clacu11g1134 . 1 228 G2-like Transcription Factor Family AT1G69580 56.0 1.2e-49 194.1
Clacu09g2308 . 1 379 G2-like Transcription Factor Family AT1G79430 55.0 2.8e-86 315.8
Clacu02g1922 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 7.2e-74 274.6
Clacu01g2175 . 102 344 G2-like Transcription Factor Family AT2G01060 62.3 2.0e-56 216.1
Clacu04g0629 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.2e-91 333.6
Clacu10g1634 . 1 283 G2-like Transcription Factor Family AT3G10760 57.8 5.2e-82 301.6
Clacu04g0629 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.4e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006004 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47685 PF00249 Myb_DNA-binding 2.10E-05 CL0123 Clacu TF