Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1230 ATGGAACTACTAAATGAAAAGGCTGAGAAAAATGGGACAGTTCAATCATTTTCGTGCTGGAGGATTTTGGATATAGTTGCAGAGGTGCTGCATCTACACATGATTTACTTGCCTGAAAAGCCATCGACGAGCTCGAAGGCAGCAATGGACGACGAAATTGATGATGATTCAAAGGAAACTGAATTTCAACATCGCATGGGGAATCAACCTCAGTTTCTTCCGTCTTCTTCCTCTAAACCTATTGGCTATCTTTCTGCATTTGTACAGGCTGCGGGAATAAAAGTTCTAGCGGCTCCCGTTTTTGGGAATTTCAAGGGAAGAAAAGAGAAGATGGATTATATGATGGATGGTCGTGGGGGTTATGGCGGTGGGTCAACTGATGAACAAGAAGGTTCTAATGATCGCAAGGGGAAAAAGACTTACCATCGTCATAATCCTTACCAGATTCAGCAACTTGAATCATTTTTCAGGGCATGCCCACACCCTGATGAAAATCAGCGGCGCCAGCTGAGTCAAGAGCTTGGTCTTGAGACCAAACAGATCAAATTTTGGTTTCAAAACAAGAGGACTCAAACAAAGGCTCAGAATGAGCGAGCAGACAACTCTTCGCTTCGGACAGAGAATGAAAAGATTCAATGTGAAAATCTTGCGATTAGAGAAGCGTTGAGGAATGTGATCTGTCCATCCTGTGGAGGTCCACCTTTTGGAGAGGAAGAACGGCAGCGTAATCTCCAAAAACTACGTCTTGAAAATTCTCACTTAAAAGAAGAGCATGACAAAGTGTCTAACCTTCTTGCCAAGTACATTGGAAAACCAATATCACAACTTGAATCACTATTGCCTGTTCTTGGATCTTCAATTGATTTGTCACCAAGAAGTTCCCTTACCCAAATAGTTGCAAGTCCTGCAGTCGATCTTATTTCTGATCCTGTGATATTAGATGGAGCAGCAACACCCTACCAATCAAGAGGTATTAATGATTTGGAAAATGCTCTTATGTTGGAAACTGCTGCAACTGCCTTGGAAGAGTTAATCAGACTTCTGAGGATTGATGAGCCTTTGTGGATGAAGACCCTGAATGATGGGAGGTATGTTCTCCATCGTGAAAGCTACGACAAAATATTTCCTAGACCAAATCACTTCAAATCTTCTAGTGCTCGTACTGAATCATCAAAAGCTTCAGGAGTGGTGACAATGAGTGCAATTCAATTGGTTGATTTTTTTTTAGATGCGGATAAATGGGCAGATCTTTTTCCAACCATCATTATGAATGCAGACACATTTCATATTATTGACCCTGGGATGCCTGGAAATCGCAGTGGTGCTTTGCAGTTGATGTATCAACAAATGCACATCTTTTCACCCCTCGTGTCTCCTCGGGACTTCTGCTTCCTTCGACACTGTCAGCAGATTGAGCTTGGTGTCTGGGTAATTGTGGATGTTTCATATGAAATCTTAAAGGATTGTGTCACCTCTGCCCGCTGCTGGAGGCTTCCTTCTGGATGCTTGATTCAAGAAATGCCCAATGGTTGCTCTAAGATTACCTGGGTCGAGCATGTGGAAGTGGATGATAAAACACAAACCCACCGGCTCTATCGAGATCTTGTGTTCAATACTTTGGCATATGGAGCCGATCGATGGTTTTTCACTCTTCAAAGGATGTGTGAGAGATTGGCTTACACTTTCAGGGATTGTGCACCTAGCCATGAACTTGGAGGAGTGTTAACTTCTCCCGAAGGTAGGAGAAGCATCACGAAGCTGTCACATAGAATGGTCAAAAATTTCTGTGGCGTACTGAGCATGTCAGGTAAATTAGATTTCCCTCAGTTATCTGAAGTGAACAACAGCGGTGTTCGAATATCTGTTCGGATTAGCTCGGAACTGGGGCAACCCAGTGGGACAGTCGTTAGTGCGGCGACATCTCTTTGGCTTCCCCTGCAACCTGAAATTATCTTTAATTTCTTCAGGGATGAGAAGGCCAGAGTTCAGTGGGATGTTCTCTCTTATGGCAACCCAGTACATGAAATTGCACACATCTTGACAGGAGTTCATCCAGGAAACTCAATATCGATAATTCGGAACAACATGCTAATTCTTCAAGAAAGCTGCATAGATCCGCTAGGATCCTTAGTGATATATGCACCCATCGACTTGCCTGCTATGAACATTGCAACAAGTGGTCAGGACCCATCAGGGATACCGATACTTCCATCAGGGTTTGTAATCACAGGGGATGGCCGTATGCATTCAGGAATTGGAGCTTCGACGAGTGCTACCTCAGGGAGGCCGAGCGGGTCTCTGTTAACCATAGCTTTTCAGATATTGGTGTCCAGTGTATCATCTTCAAAACAACTGAATGTGGAGTCTGTGGCAACAGTGAATACTCTTATTAGTGCCACAGTTCAGAGGATAAAGGCTGCATTGAATTGCTCTGGCTTGGATTGA 2445 43.68 MELLNEKAEKNGTVQSFSCWRILDIVAEVLHLHMIYLPEKPSTSSKAAMDDEIDDDSKETEFQHRMGNQPQFLPSSSSKPIGYLSAFVQAAGIKVLAAPVFGNFKGRKEKMDYMMDGRGGYGGGSTDEQEGSNDRKGKKTYHRHNPYQIQQLESFFRACPHPDENQRRQLSQELGLETKQIKFWFQNKRTQTKAQNERADNSSLRTENEKIQCENLAIREALRNVICPSCGGPPFGEEERQRNLQKLRLENSHLKEEHDKVSNLLAKYIGKPISQLESLLPVLGSSIDLSPRSSLTQIVASPAVDLISDPVILDGAATPYQSRGINDLENALMLETAATALEELIRLLRIDEPLWMKTLNDGRYVLHRESYDKIFPRPNHFKSSSARTESSKASGVVTMSAIQLVDFFLDADKWADLFPTIIMNADTFHIIDPGMPGNRSGALQLMYQQMHIFSPLVSPRDFCFLRHCQQIELGVWVIVDVSYEILKDCVTSARCWRLPSGCLIQEMPNGCSKITWVEHVEVDDKTQTHRLYRDLVFNTLAYGADRWFFTLQRMCERLAYTFRDCAPSHELGGVLTSPEGRRSITKLSHRMVKNFCGVLSMSGKLDFPQLSEVNNSGVRISVRISSELGQPSGTVVSAATSLWLPLQPEIIFNFFRDEKARVQWDVLSYGNPVHEIAHILTGVHPGNSISIIRNNMLILQESCIDPLGSLVIYAPIDLPAMNIATSGQDPSGIPILPSGFVITGDGRMHSGIGASTSATSGRPSGSLLTIAFQILVSSVSSSKQLNVESVATVNTLISATVQRIKAALNCSGLD 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11654153 11662659 + ClG42_05g0123000.10 Clacu05g1230 248977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1230 814 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 127 811 IPR042160 -
Clacu05g1230 814 Gene3D - 125 212 - -
Clacu05g1230 814 Pfam Homeodomain 138 193 IPR001356 GO:0003677(InterPro)
Clacu05g1230 814 Gene3D - 335 536 IPR023393 -
Clacu05g1230 814 ProSiteProfiles 'Homeobox' domain profile. 135 195 IPR001356 GO:0003677(InterPro)
Clacu05g1230 814 MobiDBLite consensus disorder prediction 117 141 - -
Clacu05g1230 814 ProSiteProfiles START domain profile. 326 560 IPR002913 GO:0008289(InterPro)
Clacu05g1230 814 SUPERFAMILY Homeodomain-like 124 196 IPR009057 -
Clacu05g1230 814 SMART START_1 335 557 IPR002913 GO:0008289(InterPro)
Clacu05g1230 814 Coils Coil 194 214 - -
Clacu05g1230 814 Coils Coil 237 264 - -
Clacu05g1230 814 FunFam Homeobox-leucine zipper protein HDG1 125 211 - -
Clacu05g1230 814 SMART HOX_1 137 199 IPR001356 GO:0003677(InterPro)
Clacu05g1230 814 CDD START_ArGLABRA2_like 331 556 - -
Clacu05g1230 814 SUPERFAMILY Bet v1-like 578 746 - -
Clacu05g1230 814 ProSitePatterns 'Homeobox' domain signature. 170 193 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu05g1230 814 Pfam START domain 337 557 IPR002913 GO:0008289(InterPro)
Clacu05g1230 814 CDD homeodomain 138 196 IPR001356 GO:0003677(InterPro)
Clacu05g1230 814 SUPERFAMILY Bet v1-like 328 559 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1333 Clacu-Chr4:27193784 Clacu05g1230 Clacu-Chr5:11654153 3.00E-209 dispersed
Clacu05g1230 Clacu-Chr5:11654153 Clacu09g1169 Clacu-Chr9:11397695 5.20E-144 dispersed
Clacu05g1230 Clacu-Chr5:11654153 Clacu06g0005 Clacu-Chr6:307312 1.10E-159 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47686 PF01852 START 4.90E-36 CL0209 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1230 K09338 - csv:101205899 1303.12