Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1260 ATGGCGACGAAGATCGACGTAATCGAAGAGGAAGAAATCTCAAAGCTCAAAGAAGGCACTCTCATTTCCGCCGTCGCCCGACTCTGTCCCTCGAATTCGGTCGTCATCATCCAAAAGGTTATCGCGGAGGTGATCGGAACGTACTTCGTGATCTTCACCGGATGTGGAGCGGTGGCGGTGAACAAAATTTATGGATCAGTGACGTTTCCGGGAATCTGTGTGGTTTGGGGATTGATTGTGATGGTAATGGTGTATTCGGTGGGACACATCTCTGGAGCGCACTTCAACCCTGCTGTTACTCTCACCTTTGCCCTTTTTCGTCGCTTCCCCTTCTCTTGGGTACCAATATACATAGGAGCTCAAGTGATGGGGTCCCTTCTGGCAAGCTGCACATTGGACCTAATGCTTGAAGTGACCCCGGAAGCCTTTTTTGGGACGGTGCCCGTTGGATCCAATCTCCAATCTTTGGTTCTTGAAATTACCATCACATTTCTCTTGATGTTTGTCGTCTCTGGGGTCTCCACTGATGACAGAGCCGTAGGAGAATTGGGAGGAATTGTGGTTGGAATGACCATTCTCTTGAATGTTTTCGTCGCCGGGCCAATTTCAGGAGCTTCTATGAATCCAGCTAGGAGCATTGGACCAGCAATAGTGAAACGACAGTTCAAAGGATTATGGGTTTACATAGTAGGACCATTGGTCGGAGCGGTCGCCGGAGGATTTTCCTATAACCTTCTTAGATTCACAAACAAGCCACTGCGAGAGATTGCCAAAAGCAGCTCATTTCTCACCGCCAACTAG 801 48.81 MATKIDVIEEEEISKLKEGTLISAVARLCPSNSVVIIQKVIAEVIGTYFVIFTGCGAVAVNKIYGSVTFPGICVVWGLIVMVMVYSVGHISGAHFNPAVTLTFALFRRFPFSWVPIYIGAQVMGSLLASCTLDLMLEVTPEAFFGTVPVGSNLQSLVLEITITFLLMFVVSGVSTDDRAVGELGGIVVGMTILLNVFVAGPISGASMNPARSIGPAIVKRQFKGLWVYIVGPLVGAVAGGFSYNLLRFTNKPLREIAKSSSFLTAN 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12231136 12240841 - ClG42_05g0126000.10 Clacu05g1260 249007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1260 266 SUPERFAMILY Aquaporin-like 36 256 IPR023271 -
Clacu05g1260 266 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu05g1260 266 PRINTS Major intrinsic protein family signature 158 176 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu05g1260 266 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu05g1260 266 PRINTS Major intrinsic protein family signature 189 211 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu05g1260 266 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu05g1260 266 PRINTS Major intrinsic protein family signature 226 246 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu05g1260 266 PANTHER AQUAPORIN NIP2-1 24 251 IPR034294 -
Clacu05g1260 266 Gene3D Glycerol uptake facilitator protein. 5 258 IPR023271 -
Clacu05g1260 266 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Clacu05g1260 266 CDD MIP 38 246 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu05g1260 266 Pfam Major intrinsic protein 33 243 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu05g1260 266 NCBIfam MIP family channel protein 42 243 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2479 Clacu-Chr1:35225250 Clacu05g1260 Clacu-Chr5:12231136 2.00E-79 dispersed
Clacu05g0626 Clacu-Chr5:5192801 Clacu05g1260 Clacu-Chr5:12231136 9.80E-38 dispersed
Clacu05g1260 Clacu-Chr5:12231136 Clacu10g1495 Clacu-Chr10:28165123 8.10E-54 dispersed
Clacu05g1260 Clacu-Chr5:12231136 Clacu10g2158 Clacu-Chr10:34732346 1.00E-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1260 K09874 - csv:101215315 459.144