Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1278 ATGGAGAATTTAATGGGTTTGCTAAGAATCCATGTGTTTAGAGGTGTTAATCTTGCTGTAAGAGATGTTGTTAGCAGTGATCCTTATGTTATTTTCAAGATGGGCAAACAGAAATTAAAGACTCGAGTAGTGAAGCAAAACATCAATCCAGAATGGAATGAAGATCTAACTCTATCAATCCAAGATCCAAATCTCCCAGTGAATGTGCTCGTATACGACAGAGACTTATTCTCACTTGACGACAAGATGGGGGATGCAGAGTTCGACGTTCGACCGTTCATGGAAGCGGTGAAGATGAGATTGAACAATCTCCCAAGTGGCACCATCATAACAAAGATTCAACCAAGTAGGGAAAATTGTTTGTCTGAAGAAAGTTGCATAGTTTGGGTAAATGGACAAGTTATTCAGAAAATGTTTCTAAGGTTAAGAAATGTGGAGTCTGGTGAAATTGAGCTGCAGTTGCAATGGATTGATATTCCTGGCTCTAGGGGATTGTAG 498 39.56 MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSIQDPNLPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKMRLNNLPSGTIITKIQPSRENCLSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12650465 12652058 - ClG42_05g0127800.10 Clacu05g1278 249025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1278 165 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Clacu05g1278 165 SMART C2_3c 7 102 IPR000008 -
Clacu05g1278 165 Pfam C2 domain 6 93 IPR000008 -
Clacu05g1278 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 163 IPR044562 -
Clacu05g1278 165 Gene3D C2 domain 4 160 IPR035892 -
Clacu05g1278 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 91 IPR035892 -
Clacu05g1278 165 CDD C2_ArfGAP 6 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2196 Clacu-Chr1:33309775 Clacu05g1278 Clacu-Chr5:12650465 1.40E-32 dispersed
Clacu04g1115 Clacu-Chr4:25401543 Clacu05g1278 Clacu-Chr5:12650465 2.10E-64 dispersed
Clacu05g1278 Clacu-Chr5:12650465 Clacu07g0610 Clacu-Chr7:9628216 7.70E-47 dispersed
Clacu05g1278 Clacu-Chr5:12650465 Clacu06g1534 Clacu-Chr6:26251364 1.40E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1278 - - - 0.0