Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1292 ATGGAGTTCCCCCAAGGAATTTTAGCGGCGGCGGTTCTGAGTTTCGCTTTTCTGGGTTTTGTCCGGATGGATCTGGCCTCTGACAGGGCCGCGCTGGTGGGGTTTCGGGCGGCGATGGGTGGCCGGCCCCGATTAGAGTGGAATCTCTCCGATGTATCACCCTGTTCTTGGGCTGGTGTTAACTGTGACAGGAGTGGGGTTTTTGAGCTCCGGCTTCCGGCAATGGGGCTCTCCGGTGAGCTTCCCTTGGGGCTTGGGAATTTGACGCAGTTACAAACTCTTTCTCTGCGGTTTAATGCTCTGTCTGGACGGATTCCGGCGGATTTTGCGAATCTTCGTGGGCTGAGGAATCTTTACTTGCAGGGGAACTTGTTTTACGGCGAGATTCCGGCGTTTCTGTTCAATTTGCAGAATCTTGTTCGGTTGAACATGGCGGACAACAATTTTTCAGGTGAGATTTCATCTGGGTTCAACAATCTCTCCCGTTTGGCTACTCTGTATTTACAGAACAATCAATTTACCGGAGTAGTTCCTGACTTAAATCTCACTCTTGAACAATTTAATGTCTCCTTTAATCGATTGAATGGTTCAATTCCCTCGAGGCTCTCTAGTTTTCCGGCGAGTTGTTTTGAGGGGAATTTGCTCTGTGGGGCGCCATTGTTACTCTGTAACTCGACAGCCACCGAGCCTGGTCGAAAGTCGAAGCTCTCAGGCGGGGCGATTGCTGGAATTGTGATCGGTGGTTTGTTTGTTTTGGTGTTGATTTTGGTTGTTTTGATTCTTGTGTGTCAAAGAAAGAGTAAAGGGAAATCGGAGTCGAAAGAGGGGGTTCGGTCGGCTGGTGAGGTTGGGGTGCCGAGAGAGAAGATGACGACAGTGGAAGGAAGTAGCGAAAGGGTAAGCATAGATCATTTGACTATAGCGAAATCATCAGGGAAGGGCGGGGAAAAGGATAAGAAATTGGTGTTCTTTGGTAATGTGGGAAATGTGTTTGATTTGGAGGACTTGTTGAGGGCGTCGGCGGAGGTCCTCGGGAAGGGGGCGTTCGGGACAGCGTATAAGGCGACACTGGAGACAGGGATGGTGGTGGCTGTGAAGCGGTTGAAGGAGATGACTGCGGCGGAGAAGGAGTTCAGGGAGAAAATGGAGGAGGTGGGGAGGATGAAGCATGAAAATTTAGTTCCTCTTAGAGCTTATTATTACAGCAGAGAGGAAAAGCTTTTGGTTTATGATTACATGCCAATGGGAAGCTTGTCTGCACTTTTACATGGTAGTAGAGAATCAGGGAGGACTCCGTTGAATTGGGAAGCAAGGTGTGGCATAGCGCTGGGAGTTAGCCGTGGGATTGATTACCTTCATTCTCAAGGCCCTACCATCTCTCATGGCAACATCAAATCCTCTAATGTTCTCCTCACCAGATCATATGAAGCATGTGTATCCGACTTTGGCCTTGCACAACTAGCCATGTCCCCATCAGCTCCAAGTCGTGTCGCTGGGTACCGAGCCCCAGAGATCACGGATTCTCGAAAGGTATCACAAAAAGCAGATGTTTATAGCTTCGGAGTGTTGTTATTGGAGATGCTAACAGGAAAATCTCCTACACATTCTATCTTCAATGATGAAGCTGTGGACCTTCCTAGATGGGTTCAATCTGTGGTTCAAGAGGAATGGACAGCTGAAGTGTTTGATGAACAACTTCTTAGGTACCAAAATGTTGAGGAGGAGATGGTTCAACTCTTAGAACTCGCTCTGCAATGTACCGTCCCGTATCCTGATAATCGTCCTGGAACGGACGAGATTGTTCGACGTATCGAAGAACTTTGTCGATCAACCTCCCAAAAACAGAGTGAGGCAATTGACAATGATGGAAATAATGGTATTTCCACACAGTTTCATTCACTAAACTCACCTCATCCACCATCTGCAGAGTAG 1932 48.19 MEFPQGILAAAVLSFAFLGFVRMDLASDRAALVGFRAAMGGRPRLEWNLSDVSPCSWAGVNCDRSGVFELRLPAMGLSGELPLGLGNLTQLQTLSLRFNALSGRIPADFANLRGLRNLYLQGNLFYGEIPAFLFNLQNLVRLNMADNNFSGEISSGFNNLSRLATLYLQNNQFTGVVPDLNLTLEQFNVSFNRLNGSIPSRLSSFPASCFEGNLLCGAPLLLCNSTATEPGRKSKLSGGAIAGIVIGGLFVLVLILVVLILVCQRKSKGKSESKEGVRSAGEVGVPREKMTTVEGSSERVSIDHLTIAKSSGKGGEKDKKLVFFGNVGNVFDLEDLLRASAEVLGKGAFGTAYKATLETGMVVAVKRLKEMTAAEKEFREKMEEVGRMKHENLVPLRAYYYSREEKLLVYDYMPMGSLSALLHGSRESGRTPLNWEARCGIALGVSRGIDYLHSQGPTISHGNIKSSNVLLTRSYEACVSDFGLAQLAMSPSAPSRVAGYRAPEITDSRKVSQKADVYSFGVLLLEMLTGKSPTHSIFNDEAVDLPRWVQSVVQEEWTAEVFDEQLLRYQNVEEEMVQLLELALQCTVPYPDNRPGTDEIVRRIEELCRSTSQKQSEAIDNDGNNGISTQFHSLNSPHPPSAE 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13001832 13003919 + ClG42_05g0129200.10 Clacu05g1292 249039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1292 643 SUPERFAMILY L domain-like 46 205 - -
Clacu05g1292 643 MobiDBLite consensus disorder prediction 612 643 - -
Clacu05g1292 643 SUPERFAMILY Protein kinase-like (PK-like) 342 604 IPR011009 -
Clacu05g1292 643 Gene3D Transferase(Phosphotransferase) domain 1 413 631 - -
Clacu05g1292 643 Gene3D Ribonuclease Inhibitor 25 209 IPR032675 -
Clacu05g1292 643 Pfam Leucine Rich Repeat 138 160 IPR001611 GO:0005515(InterPro)
Clacu05g1292 643 Pfam Leucine Rich Repeat 90 112 IPR001611 GO:0005515(InterPro)
Clacu05g1292 643 Coils Coil 371 391 - -
Clacu05g1292 643 CDD STKc_IRAK 344 607 - -
Clacu05g1292 643 FunFam Probable inactive receptor kinase RLK902 25 181 - -
Clacu05g1292 643 Pfam Protein kinase domain 342 602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1292 643 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524(InterPro)
Clacu05g1292 643 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 413 618 - -
Clacu05g1292 643 ProSiteProfiles Protein kinase domain profile. 338 607 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1292 643 SMART LRR_typ_2 88 111 IPR003591 -
Clacu05g1292 643 SMART LRR_typ_2 160 183 IPR003591 -
Clacu05g1292 643 SMART LRR_typ_2 112 136 IPR003591 -
Clacu05g1292 643 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Clacu05g1292 643 PANTHER OS05G0588300 PROTEIN 11 612 IPR050994 -
Clacu05g1292 643 FunFam pollen receptor-like kinase 1 307 412 - -
Clacu05g1292 643 Gene3D Phosphorylase Kinase; domain 1 308 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0867 Clacu-Chr1:9908779 Clacu05g1292 Clacu-Chr5:13001832 8.10E-137 dispersed
Clacu05g1292 Clacu-Chr5:13001832 Clacu11g0407 Clacu-Chr11:3813284 1.00E-123 dispersed
Clacu08g0460 Clacu-Chr8:7232100 Clacu05g1292 Clacu-Chr5:13001832 1.40E-08 dispersed
Clacu05g1292 Clacu-Chr5:13001832 Clacu04g1104 Clacu-Chr4:25289006 2.10E-164 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73572 PF00069 Pkinase 1.70E-38 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1292 - - - 0.0