Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1305 ATGAAGCGAGGCCACACCCATCAATCCTCAAATTCCGCCGCCGCAGCCGCTGGCAACCCCAAGACATGGGCGGTCGAGGATGAGGAAGACGACGACAAGCATCTAGCTGCTCTTGGGTACAATGTCCGGTCGTCGGACATGGCGGACGTAGCTCTGAAACTGGAACAGCTAGAAATGGTAATGGGTTTGTCGGAAGAAGATGGAATTTCTCACCTCTCTTCCAATACAGTCCATTACAATCCCTCCGATGTTTCTTCTTGGGTTCAAAGCATGCTCGCTGAACTCAATACTCCGCTTCAATCCCAAGGAATAACCCACGATCCTGTTCTTGCCATAGCTGAATCCACTTCCTCCTCCATCGCCGCCGCCTTCACCGACGATTCTGAGTATGATCTCAGAGCCATTCCTGGAGTTGCTGCTTTCCCACAAATCGATTCCACCAACCCCAGAAAGCGATTCAAGAAATCAGATTCCGAATCGCTTCTTGTTACTGCATCTTCTTCTTCTTCTTCGTCGTCGTCGGAGCAGTCGCGCTCGGTGGTTCTGGTGGATTCCGCCGAGACTGGCGTCCGTCTGGTCCACAGCCTTCTCGCCTGCGCCGACGCCGTCCACACAAACAATCTCAACCTTGCCGAGGCTCTACTAAAACACATCAGAATCCTCGTTGAAGCTCAGGCCGGCGCTATGAGAAAAGTCGCCGGCTATTTCGCTCAAGCCCTCTCTCGCCGGATTTACAGATTTTACCCACAAAAGCCCTTCGATTATTCATCTTCATACACCGATCTTCTCCAAATGCATTTCTATGAATCTTGCCCCTATCTGAAATTCGCCCATTTCACTGCCAATCAAGCCATTCTCGAATCCGTTGGTTCTGCTGGTACCGTCCACGTCGTCGATTTCAACCTCCAGCAAGGCCACCAATGGCCGCCGTTGATTCAGGCCTTCGCACTCCGACCAGGTGGGCCTCCGGCGTTTCATCTTACTGGAATCCATCCCCCGCCGGAGGAAAATTCCACCGACGGATTACAGGAAGTGGGTTCGAAATTGGCGCAATTCGCGGATAAATTCGGCGTAAAATTCGAATTTCGTGGGTTCTTCTGCAACAATTTGGCCGATCTGGAACCGTCAATACTCAATTTAGAAACAGAAACCGTCGCTATAAACTCCATTTTCGAGCTCCACCGGCTACTGGCCAATCCGGGCGCGATTGAAAAAGCTCTAACAACAATCAAAGAACTTAACCCCAAAATCGTCACCGTCGTGGAGCAGGTCGCCGACCACAACGGACCGTCGTTCGTAGAACGATTCACAGAAGCTCTACACTATTATTCGAGCTTATTCGATTCGTTAGAAGGGTCGCCGGCAGGGGAGGAGGATGTGGTGAGGTCAGAGGAATATTTAGGGAGACAAATCTGCAACGTAGTGGCGTGTGAAGGTTCCGACCGTGTCGAGCGTCATGAAACGGTGGCGCAGTGGCGGAGCCGGTTACGCTCGAGTGGATTCGAGATGGTTCATATGGGTTCGAACGCTTTCAAGCAGGCCAGTACTTTGCTGGCGGCTCTGTTCGGAGGTGGAAATGGATACAGAGTTGAAGAGAATAATGGGAGTTTGACGTTGGGATGGCACACTCGGCCGCTCATCGCCACTTCGGCCTGGACGCTGGCCGGAGGCGGGGACAGCGGCGAGTCGACTCGGCCGAGTTCAGGACAGATCTGA 1716 52.56 MKRGHTHQSSNSAAAAAGNPKTWAVEDEEDDDKHLAALGYNVRSSDMADVALKLEQLEMVMGLSEEDGISHLSSNTVHYNPSDVSSWVQSMLAELNTPLQSQGITHDPVLAIAESTSSSIAAAFTDDSEYDLRAIPGVAAFPQIDSTNPRKRFKKSDSESLLVTASSSSSSSSSEQSRSVVLVDSAETGVRLVHSLLACADAVHTNNLNLAEALLKHIRILVEAQAGAMRKVAGYFAQALSRRIYRFYPQKPFDYSSSYTDLLQMHFYESCPYLKFAHFTANQAILESVGSAGTVHVVDFNLQQGHQWPPLIQAFALRPGGPPAFHLTGIHPPPEENSTDGLQEVGSKLAQFADKFGVKFEFRGFFCNNLADLEPSILNLETETVAINSIFELHRLLANPGAIEKALTTIKELNPKIVTVVEQVADHNGPSFVERFTEALHYYSSLFDSLEGSPAGEEDVVRSEEYLGRQICNVVACEGSDRVERHETVAQWRSRLRSSGFEMVHMGSNAFKQASTLLAALFGGGNGYRVEENNGSLTLGWHTRPLIATSAWTLAGGGDSGESTRPSSGQI 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13327953 13329668 + ClG42_05g0130500.10 Clacu05g1305 249052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1305 571 FunFam DELLA protein GAI 30 95 - -
Clacu05g1305 571 Pfam Transcriptional regulator DELLA protein N terminal 32 98 IPR021914 -
Clacu05g1305 571 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 171 552 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Clacu05g1305 571 SMART DELLA_2 32 105 - -
Clacu05g1305 571 MobiDBLite consensus disorder prediction 1 29 - -
Clacu05g1305 571 ProSiteProfiles GRAS family profile. 183 553 IPR005202 -
Clacu05g1305 571 Pfam GRAS domain family 192 553 IPR005202 -
Clacu05g1305 571 Gene3D - 31 95 IPR038088 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0853 Clacu-Chr3:10114291 Clacu05g1305 Clacu-Chr5:13327953 2.50E-175 dispersed
Clacu05g1305 Clacu-Chr5:13327953 Clacu06g1131 Clacu-Chr6:21508632 4.90E-117 dispersed
Clacu05g1305 Clacu-Chr5:13327953 Clacu01g2009 Clacu-Chr1:32012370 5.00E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47691 PF03514 GRAS 7.70E-124 CL0063 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1305 K14494 - csv:101203095 979.163