Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu05g1330 | ATGCGGATGAGTTGTAATGGTTGCAGAGTACTTCGCAAAGGTTGCAGTGAAAATTGCAGTATTCGACCTTGTTTGCAGTGGATCAAGACTCCTGAATCTCAGGCTAACGCTACCGTTTTTCTCGCTAAGTTCTATGGCCGTGCTGGTCTCATGAACCTCATCAACGCGGGTCCTGATCATCTCCGTCCTGCGATTTTTAGATCTCTTCTCTACGAGGCTTGTGGCCGGATTGTGAATCCGATTTACGGATCGGTTGGATTGTTGTGGTCTGGTAGTTGGCAGCTTTGTCAGGCGGCTGTAGAGGCCGTACTTAAAGGTGCTCCGATCACGCCGATCAACTCCGAGGCAGCGGCTACTGGCGATGGACCACCGTTGAAGGCCTACGACATTCGTCACGTTTCCAAGGATGAAAACTCCGTCGCGTCCAACGATGGTGGAGCCAATCGGCGAGTTAAGACTCGGTGCCGGTTCAAGCGGTCGGCTGTGAAGGCGAAAGGGAGTAAAGGAATCGACTCTACTGTCGATGAGTCGACTCGGCGATTCTGCTCTACCGAGTTGAACAGGTCGTCGAGTGGTGAGTCGTCGTTGAGTCACCAATCCGACTCGCGGCATCTCGAGAACGAGAGTAAAGAAACCGAGAGCATGATTTCAGTGGAGACGGCGGAGGTTTCTCCTCCTCCGATGCCGTCTGTTTTGTTCCGATCGGAATCCAGTTCGGTACTGAAATCCACGGGCCAGGACGGCGGCGTAGTGGCAATTCCGCAAAGTGAATTAGCTCTAGAACTAACCCTGGGGATGGAGCCGGCGTTACGTGCCCAGCACGTGATTCCAATGAAGAAGCGAAAGATAGAGGCCGACGTTGGGTTCAGGCCCAATAACGACACGTGCAATACAGTTTTGGGCCTTGATTTTTCAGCCTGA | 921 | 52.77 | MRMSCNGCRVLRKGCSENCSIRPCLQWIKTPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATGDGPPLKAYDIRHVSKDENSVASNDGGANRRVKTRCRFKRSAVKAKGSKGIDSTVDESTRRFCSTELNRSSSGESSLSHQSDSRHLENESKETESMISVETAEVSPPPMPSVLFRSESSSVLKSTGQDGGVVAIPQSELALELTLGMEPALRAQHVIPMKKRKIEADVGFRPNNDTCNTVLGLDFSA | 306 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 13981906 | 13982919 | - | ClG42_05g0133000.10 | Clacu05g1330 | 249077 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu05g1330 | 306 | MobiDBLite | consensus disorder prediction | 184 | 198 | - | - | |
Clacu05g1330 | 306 | MobiDBLite | consensus disorder prediction | 184 | 214 | - | - | |
Clacu05g1330 | 306 | MobiDBLite | consensus disorder prediction | 199 | 214 | - | - | |
Clacu05g1330 | 306 | PIRSF | AS2 | 1 | 301 | IPR017414 | - | |
Clacu05g1330 | 306 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 267 | - | GO:0010468(PANTHER) | |
Clacu05g1330 | 306 | Pfam | Lateral organ boundaries (LOB) domain | 4 | 102 | IPR004883 | - | |
Clacu05g1330 | 306 | ProSiteProfiles | LOB domain profile. | 3 | 109 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g1814 | Clacu-Chr1:30315426 | Clacu05g1330 | Clacu-Chr5:13981906 | 1.30E-44 | dispersed | |
Clacu05g1330 | Clacu-Chr5:13981906 | Clacu05g2466 | Clacu-Chr5:32783164 | 1.30E-52 | dispersed | |
Clacu05g1330 | Clacu-Chr5:13981906 | Clacu06g1588 | Clacu-Chr6:26746811 | 8.90E-73 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47693 | PF03195 | LOB | 1.80E-24 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu05g1330 | - | - | - | 0.0 |