Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1342 ATGGTTCAACCGACAAATCCATCCAAATTGCGATGGGGGGAGCTTGAAGACGACGACGGGGATCTTGATTTTCTTCTTCCGCCAAAGCAAATTATCGGGCCAGACGAAAATGGGTTGAAGAAAATTGTCGAGTATCAGTTTAACGAAGATGGTAACAAGGTCAAAATCACAACGACCACTCGTACACGCAAGCTTGCCCATGCTCGCCTTAGTAAACATGCCGTGGAGCGCCGATCTTGGGCCAAGTTCGGCGATGCTGTCCATGAAGATGTTGGCAGTCGGCTCACTATGGTCTCCACCGAGGAGATTCTTCTCGAGCGCCCTCGTGCTCCTGGTAGCAAACCAGAGGAGCCCAAGGTTGCTGGAGACCCGCTAGCTCAACTTGGTAAAGGTGGAGCTGTTCTTATGGTCTGTCGAACTTGTGGTAAAAAGGGTGACCACTGGACCTCAAGGTGCCCTTACAAAGACCTGGCACCACAAGCTGATGGATTGGATAAGCCTGTTGCACCAGAGGCTACAACTGCTGCTCCTGGTGCAACGAAGGGAGCATATGTTCCTCCAGGTATGAGAGCAGGGGCGGAGAGGACTGGAACTGACATGAGGCGCAGAAATGATGAAAACTCTGTTCGTGTTACCAACCTTTCAGAGGACACTAGAGAGCCTGACTTGCTTGAGCTCTTCCGACCTTTTGGTGCTGTTAGCCGAGTTTATGTTGCTGTTGATCAAAAGACTGGCATGAGCAGAGGGTTTGGTTTTGTAAACTTTGTGAATCGCGAGGATGCACAAAGATCAATTAACAAGCTTAATGGATATGGTTACGATAATCTCATCCTTAGAGTTGAGTGGGCCACTCCAAGGGCGAGTTAA 867 49.6 MVQPTNPSKLRWGELEDDDGDLDFLLPPKQIIGPDENGLKKIVEYQFNEDGNKVKITTTTRTRKLAHARLSKHAVERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPQADGLDKPVAPEATTAAPGATKGAYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRSINKLNGYGYDNLILRVEWATPRAS 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14341521 14343196 + ClG42_05g0134200.10 Clacu05g1342 249089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1342 288 Pfam RNA recognition motif 209 275 IPR000504 GO:0003723(InterPro)
Clacu05g1342 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723(InterPro)
Clacu05g1342 288 SUPERFAMILY RNA-binding domain, RBD 205 287 IPR035979 GO:0003676(InterPro)
Clacu05g1342 288 FunFam Eukaryotic translation initiation factor 3 subunit G 172 288 - -
Clacu05g1342 288 CDD eIF3G 37 156 IPR024675 -
Clacu05g1342 288 SMART rrm1_1 208 281 IPR000504 GO:0003723(InterPro)
Clacu05g1342 288 MobiDBLite consensus disorder prediction 172 195 - -
Clacu05g1342 288 CDD RRM_eIF3G_like 208 283 IPR034240 -
Clacu05g1342 288 Pfam Eukaryotic translation initiation factor 3 subunit G 31 157 IPR024675 -
Clacu05g1342 288 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 287 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Clacu05g1342 288 PIRSF Transl_init_eIF-3_RNA-bind 1 288 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Clacu05g1342 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 43 283 - -
Clacu05g1342 288 Gene3D - 179 288 IPR012677 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1326 Clacu-Chr4:27131484 Clacu05g1342 Clacu-Chr5:14341521 1.10E-157 dispersed
Clacu05g1342 Clacu-Chr5:14341521 Clacu11g0282 Clacu-Chr11:2601165 1.00E-09 dispersed
Clacu05g1342 Clacu-Chr5:14341521 Clacu09g0120 Clacu-Chr9:1114436 2.70E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1342 K03248 - csv:101207022 546.584