Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1393 ATGGAGCAAGGATCTGGGATTTCCACTCCTTCCCATCCTTCTCAGCTCTCGCGGGCATGGCTTACAAGGAATATAATACTTGCATACCAAAGTTTTGGAGTAGTGTATGGAGATTTGAGCACTTCACCCCTCTACGTTTACTCAAGTACATTTGCGGGGAAGTTGCAGAAACATCGAACTGAGGAAGTAGTATTTGGTGCATTCTCCTTGATCTTCTGGACTTTTACTCTGATACCATTACTAAAGTATGTTTTCATTGTATTGAGCGCAGATGACAATGGTGAAGGAGGAACCTTTGCTCTTTACTCCCTGCTCTGCCGACATGCTAAGTTGAGTTTACTTCCCAACCAACAAGCAGCTGATGAGGAGCTCTCAGCATACAGATATGGTCCATCTTCTCATGCAGTAGCCCCTTGTCAACTAAAAAGGTTTTTGGAAAGGCATAAAACACTTAGGACGATCTTACTTCTTGTCGTATTATTTGGTGCTTGCATGGTCATTGGTGATGGAGTGCTAACTCCTGCAATTTCAGTTCTATCCTCAGTTTCAGGTTTACAAGTTACTGAAGCAAAATTGACCAACGGGACACTCCTTTTGATTGCTTGTGCCATATTGGTTGGTCTGTTTGCTCTGCAGCATTGTGGCACCCATAAGGTTGCATTTATGTTTGCTCCAATAGTTATCATCTGGTTGTTGTCAATTTTCTCCATTGGTCTGTACAACATAATACATTGGAACCCAAGTATTATTCGTGCAATTTCCCCTCATTATGTTATCAAGTTCTTACAAATCACTGGTAAAGATGGTTGGCTTTCTCTCGGAGGGGTTCTTCTGGCCATAACTGGTACTGAGGCGATGTTTGCAGATCTTGGTCATTTCACGGCTTTGTCAATAAGGATTGCATTTGCGTTTGTTATCTACCCTTGTTTGGTAGTACAATACATGGGTCAAGCTGCCTTTCTGTCTAAGAACCTTGATTTGTTTCCAAACAGTTTTTATGACTCGATACCTGATCCTGTATTTTGGCCTGTTTTTGTTATTGCCACCCTTGCAGCTATTGTGGGGAGCCAGGCTGTCATTACTGCTACTTTCTCTATTGTCAAACAATGCCATGCCCTTGGTTGCTTTCCAAGAGTAAAAGTTGTCCACACCTCTAAACACATATATGGGCAGATCTACATCCCAGAAATAAACTGGATATTAATGATCCTCACTCTTTCCATTACAATAGGGTTTCAAGATACGACACTGATCGGAAATGCTTATGGACTCGCCTGCATGACAGTTATGTTCATAACAACATTTCTTATGGCACTTGTCATAGTATTCGTTTGGCAAAAAAGTATCCTGCTAGCCGCACCTTTTCTCATCTTCTTCTGGTCTGTCGAGGGTGCCTACTTATCAGCAGCAATCATAAAAGTGCCTCAAGGAGGGTGGGTCCCGCTTGTGCTATCAGCCTTTTTTATGATAGTTATGTTTGTCTGGCACTATGGCACTCGCAAGAAGTACAACTTTGATCTACACAATAAAGTTTCACTGAAGTGGTTGCTTGGACTAGGCCCTAGCCTTGGTATAGTTCGTGTCCCTGGGATTGGCCTCATATACTCGGAATTGGCGACAGGAGTACCCGCAATATTTTCTCACTTTGTGACAAATCTCCCTGCATTTCACAAGGTTTTAGTGTTTGTTTGTGTAAAGTCTGTTCCAGTTCCATATGTCTCTCCCGAAGAACGTTTTCTGATTGGGAGAGTCTGTCCTAGACCATATCGCATGTATCGGTGCATAGTGAGATATGGCTACAAGGACATTCAGAAGGATGATGGGGACTTTGAGAACCAACTGATACTAAACATTGCAGAATTCATTCAAATGGAGGCAGAGGAACCACAATTCTCAAGCTCTGAAAGTTCTTCAGTTGATGGGAGGATGGCAGTAATAAGCACTCGGAGTATACAATCAAGCTTGAGTTTAATAGTGTCAGGGCATGAAGAAATCGGTACCAGCAACTCCATCTATAGCAGCAAATCTGCCACACTCCAAAGTTTACGATCTGTGTATGAGGATGAGAATCCACAACTAAGAAGGCGCCAAGTGAGGTTTCAGCTATCTCCCAGCCCTTCAATGGACCCTAGAGTTAGGGAAGAATTAATAGACTTGATCCAAGCCAAAGAAGCGGGTGTAGCATATATAATGGGGCACTCATATGTGAAGGCCAGAAGATCTTCATCGTATTTGAAGAAGCTTGTGATAGATATCGGATACTCGTTCCTCCGAAAGAACTGCAGAGGCCCGCTGTTGGCAGCAGAGGGTGACACAACACAACAGCATGATATTCAGATCTGTGGGGTAGCATCTGATCTGAAATTGGCTGTAGGCATGGGTAGGTGCTTCTTCTCACTTGCAATGCAAACAGGAAAAGGTTTTGGAGTTGGACATCCCTTTTTTACATCTTCTGTAATCTACTTGTAG 2469 42.93 MEQGSGISTPSHPSQLSRAWLTRNIILAYQSFGVVYGDLSTSPLYVYSSTFAGKLQKHRTEEVVFGAFSLIFWTFTLIPLLKYVFIVLSADDNGEGGTFALYSLLCRHAKLSLLPNQQAADEELSAYRYGPSSHAVAPCQLKRFLERHKTLRTILLLVVLFGACMVIGDGVLTPAISVLSSVSGLQVTEAKLTNGTLLLIACAILVGLFALQHCGTHKVAFMFAPIVIIWLLSIFSIGLYNIIHWNPSIIRAISPHYVIKFLQITGKDGWLSLGGVLLAITGTEAMFADLGHFTALSIRIAFAFVIYPCLVVQYMGQAAFLSKNLDLFPNSFYDSIPDPVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLSITIGFQDTTLIGNAYGLACMTVMFITTFLMALVIVFVWQKSILLAAPFLIFFWSVEGAYLSAAIIKVPQGGWVPLVLSAFFMIVMFVWHYGTRKKYNFDLHNKVSLKWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGYKDIQKDDGDFENQLILNIAEFIQMEAEEPQFSSSESSSVDGRMAVISTRSIQSSLSLIVSGHEEIGTSNSIYSSKSATLQSLRSVYEDENPQLRRRQVRFQLSPSPSMDPRVREELIDLIQAKEAGVAYIMGHSYVKARRSSSYLKKLVIDIGYSFLRKNCRGPLLAAEGDTTQQHDIQICGVASDLKLAVGMGRCFFSLAMQTGKGFGVGHPFFTSSVIYL 822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15414801 15422253 - ClG42_05g0139300.10 Clacu05g1393 249140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1393 822 Pfam K+ potassium transporter integral membrane domain 27 516 IPR053951 -
Clacu05g1393 822 Pfam K+ potassium transporter C-terminal domain 529 764 IPR053952 -
Clacu05g1393 822 NCBIfam potassium uptake protein 27 763 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Clacu05g1393 822 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 16 765 IPR003855 GO:0006813(PANTHER)|GO:0015079(InterPro)|GO:0015079(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)|GO:0071805(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0060 Clacu-Chr3:756390 Clacu05g1393 Clacu-Chr5:15414801 3.70E-229 dispersed
Clacu03g0421 Clacu-Chr3:4621736 Clacu05g1393 Clacu-Chr5:15414801 1.20E-198 dispersed
Clacu05g1393 Clacu-Chr5:15414801 Clacu09g1930 Clacu-Chr9:34180129 6.80E-245 dispersed
Clacu05g1393 Clacu-Chr5:15414801 Clacu10g1431 Clacu-Chr10:27452568 1.20E-246 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1393 K03549 - csv:101208973 1464.9