Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1421 ATGGCCATCTCTGAAACTCAGTTCCCTTCTTCTCTCATCCCTAATTTCCTCTACTCCTCTTCTGCCATTCCATTCCACAAGATTCTCCGCTCCAATCTTCCTTCTGAATCGCCATCTCCGAGCCTCGAATCCTCCACTTCGATGAAGGCCTTCGCGGTTCCTTCTCCCACTGAACCGAGCAAGAAATTGGAGATGTATTCGCCGGCTTTCTACGCCGCCTGTGCCGTCGGTGGAAGCCTCAGCTGCGGTCTCACTCACATGACCGTCACTCCGCTCGATCTCGTCAAGTGTAATATGCAGATTGACCCGGTGAAATACAAGAGCATTTCATCTGGTTTTGGAATTTTGCTAAAGGAGCAAGGAATCAGGGGGCTGTTTAGGGGTTGGGCGCCAACACTACTAGGTTACAGTGCTCAGGGTGCTTGCAAGTACGGCATCTACGAATTCTTTAAGAAATACTATTCCGATATAGTCGGTCCTGAGTATGCAGCAAAGTACAAGACATTGATCTATCTTGCTGGTTCTGCGTCTGCTGAAGTGATTGCAGATGTTGCACTTTGCCCCTTTGAAGCTGTTAAAGTTAGAGTTCAGACACAGCCAGGTTTTGCCAGAGGTTTGTCAGATGGCCTTCCCAAATTTGTTAGATCGGAAGGTGCTCTTGGGTTGTATAAGGGTATTGTTCCTCTGTGGGGACGTCAAATCCCATATACAATGATGAAGTTTGCAACATTTGAGAACCTGGTGGAACTCATATACAAGCATGTCATCCCCAAGCCAAAGAACGAATGCAGCAGCCCCTTGCAACTCGGCGTCAGCTTTGCTGGTGGATATATTGCCGGTGTTTCTTGTGCTATAGTTTCTCATCCTGCGGATAATCTTGTCTCCTTTCTCAATAATGCTAAAGGGGCTACCGTTGGTGAGGCAGTTCAGAAGCTTGGATTATGGGGTCTCTTCACACGAGGGCTGCCTCTACGCATAGTGATGATTGGAACCCTCACTGGAGCTCAGTGGGTTATCTATGACGCATTCAAAGTTTCTGTGGGATTGCCAACTACCGGTGGGGTTGCCCCTCCCATTGCTGCATCCCCAGAACATACACATACAACTGCGAGTGCGTAG 1119 48.53 MAISETQFPSSLIPNFLYSSSAIPFHKILRSNLPSESPSPSLESSTSMKAFAVPSPTEPSKKLEMYSPAFYAACAVGGSLSCGLTHMTVTPLDLVKCNMQIDPVKYKSISSGFGILLKEQGIRGLFRGWAPTLLGYSAQGACKYGIYEFFKKYYSDIVGPEYAAKYKTLIYLAGSASAEVIADVALCPFEAVKVRVQTQPGFARGLSDGLPKFVRSEGALGLYKGIVPLWGRQIPYTMMKFATFENLVELIYKHVIPKPKNECSSPLQLGVSFAGGYIAGVSCAIVSHPADNLVSFLNNAKGATVGEAVQKLGLWGLFTRGLPLRIVMIGTLTGAQWVIYDAFKVSVGLPTTGGVAPPIAASPEHTHTTASA 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16662489 16667642 + ClG42_05g0142100.10 Clacu05g1421 249168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1421 372 Gene3D Mitochondrial carrier domain 70 346 IPR023395 -
Clacu05g1421 372 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 49 356 IPR044677 GO:0005315(InterPro)|GO:0005315(PANTHER)|GO:0031305(PANTHER)|GO:0035435(PANTHER)|GO:1990547(InterPro)
Clacu05g1421 372 ProSiteProfiles Solute carrier (Solcar) repeat profile. 69 153 IPR018108 -
Clacu05g1421 372 Pfam Mitochondrial carrier protein 167 254 IPR018108 -
Clacu05g1421 372 Pfam Mitochondrial carrier protein 71 155 IPR018108 -
Clacu05g1421 372 SUPERFAMILY Mitochondrial carrier 71 342 IPR023395 -
Clacu05g1421 372 ProSiteProfiles Solute carrier (Solcar) repeat profile. 166 250 IPR018108 -
Clacu05g1421 372 FunFam Phosphate carrier protein, mitochondrial 69 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0780 Clacu-Chr1:8442344 Clacu05g1421 Clacu-Chr5:16662489 3.70E-166 dispersed
Clacu02g0337 Clacu-Chr2:3084510 Clacu05g1421 Clacu-Chr5:16662489 2.70E-85 dispersed
Clacu05g1421 Clacu-Chr5:16662489 Clacu06g1928 Clacu-Chr6:29550412 2.20E-150 dispersed
Clacu05g1421 Clacu-Chr5:16662489 Clacu05g2278 Clacu-Chr5:31139710 1.40E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1421 K15102 - csv:101203018 657.521