Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1504 ATGGGGAAGAACGAATTTCTAACCCCTAAAGCAATCGCAAACAGAATCAAGGCAAAAGGGCTACAGAAGCTGAGATGGTATTGCCAGATGTGTCAAAAGCAGTGCCGGGATGAGAATGGCTTTAAATGTCACTGTATGAGTGAAAGCCACCAGCGCCAGATGCAGATCTTTGGCCAAAATCCCCATCGTATCGTGGAAGGCTACTCTGAAGAGTTTGAGAGTTCTTTCATGGAGCACATTAAGCGTAGCCATCGGTTCAGTCGCGTGGCAGCTACAGTGGTCTATAATGAATACATTAATGACAGACATCATATTCATATGAATTCAACTCAGTGGGCTACTCTGACTGAGTTTGTAAAACATTTGGGTCGAACTGGGCAATGTAAAGTAGAGGAGACTCCCAAGGGTTGGTTCATTACTTACATAGATAGAGATTCAGAGACGCTTTTTAAAGAGAGAATGAAGAATAAGAGGATGCGGGCCGATTTAGCTGAAGAAGAGAAGCAAGAGAGAGAGATAAAGAGGCAAATTGAGAGGGCTGAGCAATTAGCACCTTTGGCTTCTGTATCTGTTGAGCCTTTGGAGGCTGAACAAACGAGAGAGTTGAAATTGGATAGTGGGGTTAAGCTAGGATTTGCTTTGGTAACATCAACAAAATTGAAGGAGAAAGGAGAGAGTTCCAGGGTGGTTTTTGATGAGGAAGAGACATATGAGACTGCGAAGGGGAAAGCTAAAGAGACTTCCAAAAACAGGATGGGTGGTGGTGGTCTGTCAGCTTTGGAGGCATTGATGAGAGAAGAAGAGATGAAGAAGGAGAAGCTTAATAGGAAGGATTATTGGCTTTGTGAGGGAATAACTGTAAAGATTATGAGCAAGGATTTGGCTGAGAAGGGATACTATAAACAGAAGGGAGTTGTACGAAAAGTGATTGATAAATATGTTGGAGAGATCGAAATGCTCGATGGCAAGCATGTGTTGAGAGTTGATCAAGAAGAATTAGAAACAGTGATACCACAAATTGGTGGCTTAAGAAGGGTGTGTATGATGGAAGGATGCTTAAGGCTGTTGAATACGAAGATATTTGTAAACTTGCATCATAACTTTGAGGGCAATGCAGAGGGATGTCTGATGCCAGTGGTTGAGGGAACCCTCCCTCTCCCACCCCAAAATGAATTTGATCGCACATTCTACATCTTTCATGTATCCATGAATGTCTTTGATACATATGAAGATGTTGAGTATGAGCATTGTCTTTTTGCCGTTGCACCATCAATGCTTGATATGAACACGGAAGAAGAAACTTCACCCTTTTGGCTGGCACTGGAAAAAGTTTTTGGGCTTGAGGAGATCATCATCATCATTTTGTTGCAAGTTGATAATGTCATGGAAGTCAACAGAATTGCCATATTGATGCTTGAATTTTTGGAAATGTTCTATTCCTCTTTTCTTTCTGTGTTTTTAAATGCTAAGAGAAGAAATCTCCACTTCCAGTCACTTCCTTCATCTCTGACTGGTTTTTTGACGTCTCGATGTAATGTTAGGGTTTTCGCTACGCTCGACTCCATTTGCTGGAATTTTGAGGTTTGGGTTCTGCTGCTGCTGGCCTATTTCTTCGAAAAAGCTCGAATTTTTGTACTGATAGTGATGTCTATGAACAACAATAACCCGCCGAAGAGCCTTGGGGTGGCTTCTTCTTCGCCTTTTGGAAATTCTGGGATGGTTCCACCATCTATGGCAGCAAATTCCACATCATTTTCTCAGCCGCAAGCTCAAGCTCAATTAGGAGCTGGGTTTCAAAATCCATTTCCGCTGTGCACCGCTCAGGTTCTTGCTCAAGCTCAGTTAAAGGCTCACGCTCATGCCCAAGCTCAAGCACAGGCAGCTCACGCCCAGTTTCAAGCTCAGTTACAAGCTCAAGGGCTGTCCCTAACTCAGAGCCAGAATGTTGGTGGTGGGAACATGGGTTCGCCTTCACCAGGATTTTCCACACCAGGCCTTGCAGGTGTCAAGCGAATTCCTCAAAAGCCACCAGTTCGGCCTCCTATTCTTTCTCCTGGTACCACATTTTCGCCGTTGAAAACAATGGAAATTACGCCTGCTGCTCGTAAAAAGAAGCAGAAGCTGCCTGAGAAGCAACTTCAAGATAAAGTTGCTGCAATCTTGCCCGAATCTGCTCTCTACACTCAGCTGCTTGAGTTTGAGTCTCGTGTTGATGCTGCTCTCGCAAGAAAGAAAGTTGACATCCATGAGGCGCTTAAAAACCCACCTTGCATTCAGAAAACTCTTCGAATTTATGTCTTCAACACATTTGCAAATCAAGTTAACACAATACCCAAAAAACCAAATGCCGATCCTCCTACCTGGACTCTTAAGATAATAGGTAGAATCTTGGAAGACGGGATAGATCCTGATCATCCTGGGGTGGTACAAAGATCAAACCCTTTGTACCCAAAATTTTCATCTTTCTTCAAGAGAGTAACCATTTCCTTGGACCAGAGGCTATATCCAGATAGTCACATCATAGTATGGGAGAATGCTCGATCACCTGCACCTCATGAGGGCTTTGAGGTGAAGAGAAAAGGAGATAAAGAATTTTCAGTTAACATTCGGTTAGAAATGAATTATATTCCAGAGAAATTCAAGTTGTCGCCTGCTTTGATGGAAGTTCTTGGTATTGAAGTTGATACTCGCCCAAGAATAATAGCTGCAATCTGGCATTATGTGAAGGCTAGGAAACTTCAGAATCCCAACGATCCATCTTTCTTTCATTGTGATCCACCTCTCCAGAAGGTATTTGGGGAAGACAAATTGAAATTTACCATGGTTTCACAGAGAATATCACAGCACTTGTTTCCTCCACAGCCTATACATCTGGAGCATAAAATTAAGCTTTCGGGGAATAGTCCAGCAGGTACAGCATGTTACGATGTGTTGGTCGATGTGCCTTTCCCAATTCACAGGGAATTGTCTGCTCTATTAGCCAATGCAGAGAAGAACAAGGAGATTGATGCATGTGATGAAGCAATTTGTACCGCTATAAGGAAAATTCACGAGCATCGACGGAGACGTGCATTTTTCCTTGGGTTCAGTCAGTCACCGGTGGAGTTTATTGATGCCTTGATTGAATCTCAAAGCAAGGATCTAAAACTTCTTGCAGGAGAAGCTAGTCGAAATGCTGAAAAGGAGCGACGATCAGATTTCTTCAATCAACCATGGGTTGAAGATGCTGTCATCCGGTACATAAATCGAAAACCAGCAACAGGCAGCGATGCACCTGGAAGTACATGA 3288 43.13 MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGQNPHRIVEGYSEEFESSFMEHIKRSHRFSRVAATVVYNEYINDRHHIHMNSTQWATLTEFVKHLGRTGQCKVEETPKGWFITYIDRDSETLFKERMKNKRMRADLAEEEKQEREIKRQIERAEQLAPLASVSVEPLEAEQTRELKLDSGVKLGFALVTSTKLKEKGESSRVVFDEEETYETAKGKAKETSKNRMGGGGLSALEALMREEEMKKEKLNRKDYWLCEGITVKIMSKDLAEKGYYKQKGVVRKVIDKYVGEIEMLDGKHVLRVDQEELETVIPQIGGLRRVCMMEGCLRLLNTKIFVNLHHNFEGNAEGCLMPVVEGTLPLPPQNEFDRTFYIFHVSMNVFDTYEDVEYEHCLFAVAPSMLDMNTEEETSPFWLALEKVFGLEEIIIIILLQVDNVMEVNRIAILMLEFLEMFYSSFLSVFLNAKRRNLHFQSLPSSLTGFLTSRCNVRVFATLDSICWNFEVWVLLLLAYFFEKARIFVLIVMSMNNNNPPKSLGVASSSPFGNSGMVPPSMAANSTSFSQPQAQAQLGAGFQNPFPLCTAQVLAQAQLKAHAHAQAQAQAAHAQFQAQLQAQGLSLTQSQNVGGGNMGSPSPGFSTPGLAGVKRIPQKPPVRPPILSPGTTFSPLKTMEITPAARKKKQKLPEKQLQDKVAAILPESALYTQLLEFESRVDAALARKKVDIHEALKNPPCIQKTLRIYVFNTFANQVNTIPKKPNADPPTWTLKIIGRILEDGIDPDHPGVVQRSNPLYPKFSSFFKRVTISLDQRLYPDSHIIVWENARSPAPHEGFEVKRKGDKEFSVNIRLEMNYIPEKFKLSPALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPNDPSFFHCDPPLQKVFGEDKLKFTMVSQRISQHLFPPQPIHLEHKIKLSGNSPAGTACYDVLVDVPFPIHRELSALLANAEKNKEIDACDEAICTAIRKIHEHRRRRAFFLGFSQSPVEFIDALIESQSKDLKLLAGEASRNAEKERRSDFFNQPWVEDAVIRYINRKPATGSDAPGST 1095
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18454146 18461846 + ClG42_05g0150400.10 Clacu05g1504 249251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1504 1095 Gene3D - 284 337 - -
Clacu05g1504 1095 Gene3D SWIB/MDM2 domain 872 957 IPR036885 -
Clacu05g1504 1095 FunFam DNA/RNA-binding protein KIN17, putative 61 160 - -
Clacu05g1504 1095 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
Clacu05g1504 1095 CDD SWIB_like 882 950 - -
Clacu05g1504 1095 FunFam DNA/RNA-binding protein kin17-like 284 337 - -
Clacu05g1504 1095 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Clacu05g1504 1095 Pfam KN17 SH3-like C-terminal domain 276 329 IPR041330 -
Clacu05g1504 1095 Coils Coil 257 277 - -
Clacu05g1504 1095 Gene3D - 60 160 IPR038254 -
Clacu05g1504 1095 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 351 IPR037321 GO:0003690(PANTHER)|GO:0005634(PANTHER)|GO:0006260(PANTHER)|GO:0006974(PANTHER)
Clacu05g1504 1095 Coils Coil 154 183 - -
Clacu05g1504 1095 SMART Kin17_mid_2 52 178 IPR019447 -
Clacu05g1504 1095 SMART swib_2 876 955 IPR019835 -
Clacu05g1504 1095 ProSiteProfiles SWIB/MDM2 domain profile. 875 952 IPR003121 -
Clacu05g1504 1095 SUPERFAMILY SWIB/MDM2 domain 870 960 IPR036885 -
Clacu05g1504 1095 Pfam SWIB/MDM2 domain 878 950 IPR003121 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1406 Clacu-Chr1:25434786 Clacu05g1504 Clacu-Chr5:18454146 1.20E-183 dispersed
Clacu05g1504 Clacu-Chr5:18454146 Clacu09g1680 Clacu-Chr9:29983176 2.80E-169 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47700 PF10357 Kin17_mid 5.20E-46 CL0123 Clacu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1504 K11650 - csv:101216251 1021.15