Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu05g1519 | ATGTTTTTCCCTTGCTCCAGCGGCGGCGATGGTGGCGGACGACTGTCGGCGTATCATCATGCCGACATGTCATCTGTTTCCGGGTCTGATATATTTGGGAATTTTCACGGCGGCGATATGGAGGTAAGTGGGGTTTTGGGGATGAAGACAGAGATGGATGCGGCGGCGGCGACGGCGGTGGAAGCGGACGGCGGCGGAAAAAAGAAAGGGGAGAAGAAGGTGAGGAAACCAAGATATGCTTTTCAGACAAGAAGCCAAGTTGACATTCTTGACGATGGATATCGTTGGAGAAAATACGGTCAAAAAGCTGTCAAAAACAACAAGTTTCCTAGGAGCTATTATAGATGCACGCATCAAGGATGCAATGTGAAGAAGCAAGTGCAAAGGCTAACAAGAGATGAAGGGGTGGTGGTGACAACATATGAAGGAATGCACACACACTCCATTGATAAGCCAACAGACAACTTTGAACAAATCTTGAGTAGAATGCAGATTTATAGTACTCCTTTTTGA | 513 | 46.98 | MFFPCSSGGDGGGRLSAYHHADMSSVSGSDIFGNFHGGDMEVSGVLGMKTEMDAAAATAVEADGGGKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTRDEGVVVTTYEGMHTHSIDKPTDNFEQILSRMQIYSTPF | 170 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 18962948 | 18965520 | - | ClG42_05g0151900.10 | Clacu05g1519 | 249266 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu05g1519 | 170 | Gene3D | WRKY domain | 74 | 150 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu05g1519 | 170 | SMART | WRKY_cls | 90 | 149 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu05g1519 | 170 | SUPERFAMILY | WRKY DNA-binding domain | 82 | 149 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu05g1519 | 170 | FunFam | WRKY transcription factor 57 | 76 | 150 | - | - | |
Clacu05g1519 | 170 | Pfam | WRKY DNA -binding domain | 91 | 147 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu05g1519 | 170 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 62 | 150 | IPR044810 | GO:0003700(InterPro) | |
Clacu05g1519 | 170 | ProSiteProfiles | WRKY domain profile. | 85 | 150 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu05g1519 | Clacu-Chr5:18962948 | Clacu07g1556 | Clacu-Chr7:30210380 | 2.30E-46 | dispersed | |
Clacu05g1519 | Clacu-Chr5:18962948 | Clacu06g0428 | Clacu-Chr6:5063751 | 1.20E-29 | transposed | |
Clacu05g1519 | Clacu-Chr5:18962948 | Clacu07g0779 | Clacu-Chr7:19700126 | 1.20E-29 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47702 | PF03106 | WRKY | 3.30E-26 | CL0274 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu05g1519 | - | - | - | 0.0 |