Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1519 ATGTTTTTCCCTTGCTCCAGCGGCGGCGATGGTGGCGGACGACTGTCGGCGTATCATCATGCCGACATGTCATCTGTTTCCGGGTCTGATATATTTGGGAATTTTCACGGCGGCGATATGGAGGTAAGTGGGGTTTTGGGGATGAAGACAGAGATGGATGCGGCGGCGGCGACGGCGGTGGAAGCGGACGGCGGCGGAAAAAAGAAAGGGGAGAAGAAGGTGAGGAAACCAAGATATGCTTTTCAGACAAGAAGCCAAGTTGACATTCTTGACGATGGATATCGTTGGAGAAAATACGGTCAAAAAGCTGTCAAAAACAACAAGTTTCCTAGGAGCTATTATAGATGCACGCATCAAGGATGCAATGTGAAGAAGCAAGTGCAAAGGCTAACAAGAGATGAAGGGGTGGTGGTGACAACATATGAAGGAATGCACACACACTCCATTGATAAGCCAACAGACAACTTTGAACAAATCTTGAGTAGAATGCAGATTTATAGTACTCCTTTTTGA 513 46.98 MFFPCSSGGDGGGRLSAYHHADMSSVSGSDIFGNFHGGDMEVSGVLGMKTEMDAAAATAVEADGGGKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTRDEGVVVTTYEGMHTHSIDKPTDNFEQILSRMQIYSTPF 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18962948 18965520 - ClG42_05g0151900.10 Clacu05g1519 249266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1519 170 Gene3D WRKY domain 74 150 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g1519 170 SMART WRKY_cls 90 149 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g1519 170 SUPERFAMILY WRKY DNA-binding domain 82 149 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g1519 170 FunFam WRKY transcription factor 57 76 150 - -
Clacu05g1519 170 Pfam WRKY DNA -binding domain 91 147 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g1519 170 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 62 150 IPR044810 GO:0003700(InterPro)
Clacu05g1519 170 ProSiteProfiles WRKY domain profile. 85 150 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1519 Clacu-Chr5:18962948 Clacu07g1556 Clacu-Chr7:30210380 2.30E-46 dispersed
Clacu05g1519 Clacu-Chr5:18962948 Clacu06g0428 Clacu-Chr6:5063751 1.20E-29 transposed
Clacu05g1519 Clacu-Chr5:18962948 Clacu07g0779 Clacu-Chr7:19700126 1.20E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47702 PF03106 WRKY 3.30E-26 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1519 - - - 0.0