Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu05g1532 | ATGGATCCTAAAACTAAAACCTCATCAACAACCAAGCAGCCCCAAGAAGTGGTAGCCAACTTTTTGAAGCCCCCAGAAGAAGAAGAAGAAGAGCATCTAGAAGAAGTAGACGAAGAATCAATCATGGGTGAAAATAAAGCAGGTGAAATAAAAGATTTCCAAATAGCAATTGCAGAGAAAGAAGAGGGCAAAAAACAGTTAGCCCCAAAACGAAGCTCAAACAAAGACCGTCACACGAAAGTGGAAGGCAGAGGGCGAAGAATCCGGATGCCAGCTCTATGTGCCGCTAGGATTTTTCAATTAACGAGGGAATTGGGTCATAAATCCGACGGCGAGACCATCCAGTGGTTGCTGCAGCAGGCGGAGCCGTCTATAATCGCAGCCACGGGGACAGGAACCATTCCAGCTTCTGCTCTAGCGGCGGCGGCAGGTTCTGTTTCGCAACAGGGGGCTTCTCTGTCGGCCGGATTGCACCAAAAATTGGAGGAATTAGGAGGTGGGGGGTCCAGTAGGGCCAATTGGGGGAATTTGGGGAGACCCCATTTGGCCGCCACACCCTCAGGGCTTTGGCCCTCATCTGTCACTGGCTTTGGCTTTCACTCTTCAACTGCTTCTGCTGCTGCTGTTGCTGCTCAATCAGCCACTAATTTACCTAATGAAACTTCAAATTACTTTCATAAACTTGGTTTCCCACCTTTTGATTGTTCCCCCACCAACATGGGTCCTATGAGTTTCACCTCTATTTTAGGTGCAAACACTCAACAATTACCTGGTTTGGAGCTTGGATTGTCCCAAGATGGCCATATTGGGGTTCTAAATCCTCAGGCGCTCAACCAGATTTACCAACAGATGGGACAGCCTAGAGTTCATCAGCAGCATCATCATCAACACCACCACCAGCAGGCTCCTGCTAAGGATGATTCTCAAGATTCAGGCTAG | 939 | 48.46 | MDPKTKTSSTTKQPQEVVANFLKPPEEEEEEHLEEVDEESIMGENKAGEIKDFQIAIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGASLSAGLHQKLEELGGGGSSRANWGNLGRPHLAATPSGLWPSSVTGFGFHSSTASAAAVAAQSATNLPNETSNYFHKLGFPPFDCSPTNMGPMSFTSILGANTQQLPGLELGLSQDGHIGVLNPQALNQIYQQMGQPRVHQQHHHQHHHQQAPAKDDSQDSG | 312 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 19331729 | 19332667 | + | ClG42_05g0153200.10 | Clacu05g1532 | 249279 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu05g1532 | 312 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Clacu05g1532 | 312 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 10 | 297 | IPR005333 | GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
Clacu05g1532 | 312 | ProSiteProfiles | TCP domain profile. | 74 | 128 | IPR017887 | - | |
Clacu05g1532 | 312 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Clacu05g1532 | 312 | MobiDBLite | consensus disorder prediction | 285 | 312 | - | - | |
Clacu05g1532 | 312 | Pfam | TCP family transcription factor | 73 | 179 | IPR017887 | - | |
Clacu05g1532 | 312 | MobiDBLite | consensus disorder prediction | 61 | 83 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu04g0973 | Clacu-Chr4:23916348 | Clacu05g1532 | Clacu-Chr5:19331729 | 6.90E-29 | dispersed | |
Clacu05g0912 | Clacu-Chr5:8086218 | Clacu05g1532 | Clacu-Chr5:19331729 | 1.20E-25 | dispersed | |
Clacu05g1532 | Clacu-Chr5:19331729 | Clacu06g0199 | Clacu-Chr6:2232923 | 6.50E-55 | dispersed | |
Clacu05g1532 | Clacu-Chr5:19331729 | Clacu04g1303 | Clacu-Chr4:26984901 | 1.60E-29 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47703 | PF03634 | TCP | 3.70E-31 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu05g1532 | - | - | - | 0.0 |