Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu05g1557 | ATGAATGACGCAGATGTTTCCAAGCAGATCCAGCAGATGGTGAGGTTCATCCGCCAGGAAGCGGAAGAAAAGGCCAACGAGATCTCCGTCTCTGCTGAAGAAGAATTCAATATTGAAAAGCTGCAGCTGGTCGAGGCAGAGAAGAAGAAGATCAGGCAAGAGTACGAGAAGAAGGAGAAGCAAGTTGAAATTCGGAAGAAGATCGAGTACTCCATGCAGCTCAATGCTTCTCGGATCAAAGTACTACAAGCTCAGGATGATGTAGTAAACAATATGAAAGAGGCAGCATCAAAGGAGCTTCTGAATGTAAGCCAAAATGAACAAGTCTACAGAAATATTTTGAAGGATCTCATTGTTCAGAGCTTGCTCCGGCTGAAAGAGCCAGCTGTTTTATTGCGATGTCGCAAAAGTGACGTCCATTTGGTGGAGTCTGTGCTGGGTTCAGCAGCTGTTGAATATGCAGAGAAAGCACAAGTTCATGAGCCAGAGATCATTGTTGACCATGTCCATCTTCCACCTGGTCCAAGTCATCACCATCATCACGGTCCTTTCTGCTCTGGAGGTGTGGTATTGGCATCTCGAGATGGGAAGATTGTCTGTGAGAACACCCTTGATGCTAGATTGGATGTTGTGTTCCGTAAAAAACTTCCAGAGATCCGAAAAAGCCTTTTCAGTCAAGTTGCTGCATGA | 690 | 45.36 | MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEKQVEIRKKIEYSMQLNASRIKVLQAQDDVVNNMKEAASKELLNVSQNEQVYRNILKDLIVQSLLRLKEPAVLLRCRKSDVHLVESVLGSAAVEYAEKAQVHEPEIIVDHVHLPPGPSHHHHHGPFCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKSLFSQVAA | 229 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 21166919 | 21170255 | + | ClG42_05g0155700.10 | Clacu05g1557 | 249304 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu05g1557 | 229 | Pfam | ATP synthase (E/31 kDa) subunit | 16 | 224 | IPR002842 | GO:0033178(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Clacu05g1557 | 229 | SUPERFAMILY | V-type ATPase subunit E-like | 87 | 224 | - | - | |
| Clacu05g1557 | 229 | Gene3D | - | 1 | 62 | - | - | |
| Clacu05g1557 | 229 | PANTHER | ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED | 1 | 226 | IPR002842 | GO:0033178(InterPro)|GO:0046961(PANTHER)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Clacu05g1557 | 229 | Coils | Coil | 38 | 61 | - | - | |
| Clacu05g1557 | 229 | Hamap | V-type proton ATPase subunit E [atpE]. | 8 | 225 | IPR002842 | GO:0033178(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Clacu05g1557 | 229 | Gene3D | - | 92 | 228 | IPR038495 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu05g1557 | K02150 | - | - | csv:101217221 | 394.43 |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Clacu08g1822 | . | 193 | 1190 | Primary Pumps ATPases(2) | AT1G10130 | 83.2 | 0.0e+00 | 1628.2 | |
| Clacu02g2138 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.8 | 0.0e+00 | 1347.0 | |
| Clacu08g1622 | . | 1 | 802 | Primary Pumps ATPases(2) | AT2G28520 | 63.2 | 4.1e-298 | 1020.8 | |
| Clacu02g0509 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.8 | 1.1e-292 | 1002.7 | |
| Clacu02g0509 | . | 6 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 75.7 | 0.0e+00 | 1233.8 | |
| Clacu08g1622 | . | 1 | 807 | Primary Pumps ATPases(2) | AT2G21410 | 73.5 | 0.0e+00 | 1195.3 | |
| Clacu02g2138 | . | 9 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 62.5 | 8.2e-299 | 1023.1 | |
| Clacu02g0509 | . | 8 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 76.9 | 0.0e+00 | 1235.7 | |
| Clacu08g1622 | . | 1 | 807 | Primary Pumps ATPases(2) | AT4G39080 | 74.2 | 0.0e+00 | 1192.6 | |
| Clacu02g2138 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.4 | 9.1e-298 | 1019.6 | |
| Clacu08g1611 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Clacu08g1612 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Clacu11g1754 | . | 136 | 273 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Clacu08g1611 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Clacu08g1612 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Clacu11g1754 | . | 110 | 273 | Primary Pumps ATPases(2) | AT1G75630 | 80.3 | 3.1e-66 | 248.4 | |
| Clacu08g1611 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Clacu08g1612 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Clacu11g1754 | . | 111 | 273 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Clacu11g1754 | . | 109 | 230 | Primary Pumps ATPases(2) | AT1G19910 | 99.2 | 5.4e-53 | 203.8 | |
| Clacu08g1611 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Clacu08g1612 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Clacu05g1865 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 82.5 | 2.4e-70 | 262.3 | |
| Clacu08g1455 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 84.2 | 3.1e-70 | 261.9 | |
| Clacu08g1611 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.9e-60 | 227.6 | |
| Clacu08g1612 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.9e-60 | 227.6 | |
| Clacu11g1754 | . | 136 | 273 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.9e-60 | 227.6 | |
| Clacu05g1865 | . | 11 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 77.5 | 6.1e-73 | 270.8 | |
| Clacu08g1455 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.3 | 1.5e-71 | 266.2 | |
| Clacu03g0182 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07810 | 80.6 | 0.0e+00 | 1672.1 | |
| Clacu03g0182 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07670 | 80.3 | 0.0e+00 | 1671.8 | |
| Clacu08g1822 | . | 193 | 1190 | Primary Pumps ATPases(2) | AT1G10130 | 83.2 | 0.0e+00 | 1628.2 | |
| Clacu03g0182 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 65.7 | 0.0e+00 | 1320.8 | |
| Clacu03g1772 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.1 | 3.8e-57 | 217.6 | |
| Clacu02g0417 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.1 | 4.5e-268 | 920.2 | |
| Clacu10g2006 | . | 62 | 169 | Primary Pumps ATPases(2) | AT3G01390 | 80.6 | 3.7e-37 | 151.0 | |
| Clacu01g0815 | . | 241 | 616 | Primary Pumps ATPases(2) | AT1G12840 | 83.2 | 1.2e-180 | 629.4 | |
| Clacu09g2243 | . | 1021 | 1281 | Primary Pumps ATPases(2) | AT3G58730 | 82.4 | 7.8e-118 | 420.2 | |
| Clacu10g1624 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 79.4 | 2.0e-206 | 715.3 | |
| Clacu08g1611 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Clacu08g1612 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Clacu11g1754 | . | 111 | 273 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Clacu02g0417 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.9 | 2.8e-270 | 927.5 | |
| Clacu05g1557 | . | 1 | 182 | Primary Pumps ATPases(2) | AT1G64200 | 73.0 | 1.6e-64 | 242.7 | |
| Clacu02g0417 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 95.8 | 9.3e-266 | 912.5 | |
| Clacu02g2138 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.8 | 0.0e+00 | 1347.0 | |
| Clacu08g1622 | . | 1 | 802 | Primary Pumps ATPases(2) | AT2G28520 | 63.2 | 4.1e-298 | 1020.8 | |
| Clacu02g0509 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.8 | 1.1e-292 | 1002.7 | |
| Clacu10g1482 | . | 120 | 461 | Primary Pumps ATPases(2) | AT3G28715 | 92.7 | 2.7e-187 | 651.4 | |
| Clacu05g1557 | . | 1 | 229 | Primary Pumps ATPases(2) | AT4G11150 | 77.0 | 2.7e-90 | 328.6 | |
| Clacu09g0169 | . | 1 | 623 | Primary Pumps ATPases(2) | AT1G78900 | 93.3 | 0.0e+00 | 1171.4 | |
| Clacu02g0417 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.1 | 4.5e-268 | 920.2 | |
| Clacu02g0417 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.9 | 2.8e-270 | 927.5 | |
| Clacu02g0417 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 95.8 | 9.3e-266 | 912.5 | |
| Clacu01g0815 | . | 241 | 616 | Primary Pumps ATPases(2) | AT1G12840 | 83.2 | 1.2e-180 | 629.4 | |
| Clacu09g2243 | . | 1021 | 1281 | Primary Pumps ATPases(2) | AT3G58730 | 82.4 | 7.8e-118 | 420.2 | |
| Clacu05g1557 | . | 1 | 229 | Primary Pumps ATPases(2) | AT4G11150 | 77.0 | 2.7e-90 | 328.6 | |
| Clacu05g1557 | . | 1 | 223 | Primary Pumps ATPases(2) | AT3G08560 | 68.6 | 8.7e-76 | 280.4 | |
| Clacu05g1557 | . | 1 | 182 | Primary Pumps ATPases(2) | AT1G64200 | 73.0 | 1.6e-64 | 242.7 | |
| Clacu03g1772 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.1 | 3.8e-57 | 217.6 | |
| Clacu10g2006 | . | 62 | 169 | Primary Pumps ATPases(2) | AT3G01390 | 80.6 | 3.7e-37 | 151.0 | |
| Clacu10g1624 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 79.4 | 2.0e-206 | 715.3 | |
| Clacu02g2138 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.8 | 0.0e+00 | 1347.0 | |
| Clacu08g1622 | . | 1 | 802 | Primary Pumps ATPases(2) | AT2G28520 | 63.2 | 4.1e-298 | 1020.8 | |
| Clacu02g0509 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.8 | 1.1e-292 | 1002.7 | |
| Clacu02g0509 | . | 6 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 75.7 | 0.0e+00 | 1233.8 | |
| Clacu08g1622 | . | 1 | 807 | Primary Pumps ATPases(2) | AT2G21410 | 73.5 | 0.0e+00 | 1195.3 | |
| Clacu02g2138 | . | 9 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 62.5 | 8.2e-299 | 1023.1 | |
| Clacu02g0509 | . | 8 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 76.9 | 0.0e+00 | 1235.7 | |
| Clacu08g1622 | . | 1 | 807 | Primary Pumps ATPases(2) | AT4G39080 | 74.2 | 0.0e+00 | 1192.6 | |
| Clacu02g2138 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.4 | 9.1e-298 | 1019.6 | |
| Clacu08g1611 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Clacu08g1612 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Clacu11g1754 | . | 136 | 273 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Clacu11g1754 | . | 109 | 230 | Primary Pumps ATPases(2) | AT1G19910 | 99.2 | 5.4e-53 | 203.8 | |
| Clacu08g1611 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Clacu08g1612 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Clacu08g1611 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.9e-60 | 227.6 | |
| Clacu08g1612 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.9e-60 | 227.6 | |
| Clacu11g1754 | . | 136 | 273 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.9e-60 | 227.6 | |
| Clacu08g1611 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Clacu08g1612 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Clacu11g1754 | . | 110 | 273 | Primary Pumps ATPases(2) | AT1G75630 | 80.3 | 3.1e-66 | 248.4 | |
| Clacu08g1611 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Clacu08g1612 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Clacu11g1754 | . | 111 | 273 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Clacu05g1865 | . | 11 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 77.5 | 6.1e-73 | 270.8 | |
| Clacu08g1455 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.3 | 1.5e-71 | 266.2 | |
| Clacu05g1865 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 82.5 | 2.4e-70 | 262.3 | |
| Clacu08g1455 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 84.2 | 3.1e-70 | 261.9 | |
| Clacu10g1482 | . | 120 | 461 | Primary Pumps ATPases(2) | AT3G28710 | 95.0 | 2.4e-194 | 674.9 | |
| Clacu10g1482 | . | 120 | 461 | Primary Pumps ATPases(2) | AT3G28715 | 92.7 | 2.7e-187 | 651.4 | |
| Clacu03g0182 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07810 | 80.6 | 0.0e+00 | 1672.1 | |
| Clacu03g0182 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 65.7 | 0.0e+00 | 1320.8 | |
| Clacu08g1822 | . | 193 | 1190 | Primary Pumps ATPases(2) | AT1G10130 | 83.2 | 0.0e+00 | 1628.2 | |
| Clacu03g0182 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07670 | 80.3 | 0.0e+00 | 1671.8 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0004110 | 2 | 0 | 1 | 3 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 2 | 2 | 1 | 1 | 3 | 1 | 1 | 1 | 1 | 1 | 3 | 1 | 1 | 41 |