Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1612 ATGATCTCTGCTGTGAAACAGTCTTCTAGGGGTATCCATTGCTCTGATGGTATTATTAGGAGCAAAATCTCGGTTCCCTCTCAGCGATCCTCGTTTCTTCCACCTCTTCCGGTGCAAAAACCTCCAAACTCCGCTGTTTCTTTTCATAAGGCTGTACATGTTTCTTCGCTTGAGAACTTTGGATCACTTCGGGTTCGTAAAGCTAATCTGATAAAATGTGAAGCTTACGAGGCTGAGCGATCGCAGCCGATCGAATCGAGCATTGAGTTGCCGAAAAGTCAGGTCCCTTCTGAGGCCGCGAAGAAGGTGAAAATTGGATCCTACTTCGCTCTTTGGTGGGCTTTGAACGTGGTTTTCAATATCTATAACAAGAAGGTGTTGAACGCTTACCCATATCCATGGCTGACATCGACTCTGTCGCTTGCCGCTGGATCTCTGATCATGTTGATCTCATGGATGACGAGAATTGCCGAGGCTCCCAAAACTGACTTCGAGTTTTGGAAGTCTTTGTTCCCTGTTGCTGTTGCCCATACAATTGGACATGTTGCTGCAACCGTGAGCATGTCCAAGGTTGCAGTTTCATTCACTCACATCATCAAGAGTGGTGAACCTGCTTTTAGCGTATTGGTTTCAAGGTTCTTGTTGGGTGAGACCTTCCCACTTCCTGTTTACTTGTCGCTCCTCCCGATCATCGGTGGGTGTGCTCTCGCTGCTGTGACCGAGCTCAACTTTAACATGACGGGTTTCATGGGTGCCATGATATCAAACTTGGCATTTGTATTCCGTAACATATTTTCGAAGAGAGGCATGAAAGGAAAATCTGTTAGCGGGATGAACTACTATGCATGTTTATCAATTTTGTCTTTGTTACTCTTGACGCCATTTGCATTTGCTGTGGAGGGACCAGAATTGTGGGCTGCTGGATGGCAAACAGCAGTTTCTCAAATTGGACCTCATTTCGTTTGGTGGGTTGCAGCACAAAGTATATTCTACCATCTCTATAATCAGGTGTCTTACATGTCCTTGGATGAGATTTCTCCCTTGACATTTAGCATTGGAAACACCATGAAACGTATATCAGTCATAGTTTCTTCCATCATCATCTTCCGAACACCTGTGCAGCCAGTCAACGCTCTCGGAGCTGCCATTGCAGTTCTTGGAACCTTCATATATTCTCAGGCAAAGCAATGA 1191 45.42 MISAVKQSSRGIHCSDGIIRSKISVPSQRSSFLPPLPVQKPPNSAVSFHKAVHVSSLENFGSLRVRKANLIKCEAYEAERSQPIESSIELPKSQVPSEAAKKVKIGSYFALWWALNVVFNIYNKKVLNAYPYPWLTSTLSLAAGSLIMLISWMTRIAEAPKTDFEFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGETFPLPVYLSLLPIIGGCALAAVTELNFNMTGFMGAMISNLAFVFRNIFSKRGMKGKSVSGMNYYACLSILSLLLLTPFAFAVEGPELWAAGWQTAVSQIGPHFVWWVAAQSIFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVSSIIIFRTPVQPVNALGAAIAVLGTFIYSQAKQ 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23291699 23294730 - ClG42_05g0161200.10 Clacu05g1612 249359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1612 396 Pfam Triose-phosphate Transporter family 104 392 IPR004853 -
Clacu05g1612 396 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 104 395 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Clacu05g1612 396 PANTHER SOLUTE CARRIER FAMILY 35 98 395 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
Clacu05g1612 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 146 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2286 Clacu-Chr1:33841197 Clacu05g1612 Clacu-Chr5:23291699 1.40E-139 dispersed
Clacu05g0282 Clacu-Chr5:2461866 Clacu05g1612 Clacu-Chr5:23291699 5.60E-86 dispersed
Clacu05g1612 Clacu-Chr5:23291699 Clacu10g0539 Clacu-Chr10:6484350 1.50E-184 dispersed
Clacu05g1612 Clacu-Chr5:23291699 Clacu01g1369 Clacu-Chr1:25023010 2.70E-61 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1612 K15283 - csv:101220046 723.391