Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1618 ACTCTCCCTCACGCCGCCGTTGTGCCGCTGCCGCCGGATTTCTCTCTCCGCCGCCACCGCTGCCTTTTTGCAATGATTCAGTCAGGGATTCCAACCCAAGTTTTGGCAGGAATTGATTGTGTACGTTGTGCTCATTCATGTTCATCCATGTCTCACCGAAACCATGACGATGAAGGTGACGTTGAGCTTCCTGTCAGCAAGGAAGATGATGTGGTTGATGAGGACATGGAAGCCCTTCGGAGAGCCTATAAGCATGTTGGAGTTAATCCTGAGGATTACATTAATCCTAGGTTGTCATCACCTGTTGCCGGAGATGCTAATCCTAGTTCTGATTCTGATGATGTTGATGATTTTGAACTTCTTCGAAATATTCAGAATCGGTTCTCATGTGTGGCTGATGAGCAGCCGTTGAGTACTCTCCCACCAATGTCCCTAGACGAGGAGGAAGATGAATTTGAGATGCTTCGTTCAATTCAGCGGCGCTTTGCAGCGTACGAAAGTGATACTTTGAGCAATAAACCCAATCAGTTGTGCGACCATGTTGGGTCTTTGAAGATGGATTTTGATGACACAGCTGTTGAGAGTCAGACAGCCTCAAAAAGGCCATCCATGCTAGCCTTTGAAAAGGGAAGCTTGCCAAAAGCTGCATTGGCATTTATTGATGCCATCAAGAAAAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAGAAAACGTTTCAAAATTCTCAAAGATTTCCAGGGTTCATGTAAACGGAGAACAACCTGTGCACTGTCTCAAATGATAGATCCTCGAGTCCAGTTGATTTCAGCTGCAAAACCACAAGCAAAGGATTCATCAAAGAAGGACAAACGATTATCTGCAATGCATTATGGCCCAGCTGAGAATTCTCATGTTGCATGCTACAGAATGGCATTAATGAAGTTTCCTCGTGTAGATCGAAAAAAATGGTCCGTTGTAGAAAGGGAGAATCTAGGGAAGGGAATAAGACAACAATTTCAGGAGATGGTGCTTCAGATTTCAGTGGATCAAATTAGTGGGCTACAAGGATTCTCTGCAGATTCAGATGATTTGGATAACATTCTTGCATCAATAAAAGACCTTGACATCACTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCGGGGTCGCTCAGGGGCAGAATGTGAAGCGAGGTGGTTGAATTTCGAAGACCCCCTAATTAATCGGGATCCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAGGGGTTGAATAACTGGATTGAGATAGCAGTTTCGTCGGGTACAAATAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAACGCTTCCATATTAAAGAGGGAGTGGACCAAAGACGAGGATGATAAACTTCGAGCTGCTGTTGCTACATTTGGCCTGGGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAACTGGCCCACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGTCATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTCTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTTAATTGTTTAGATCCTTCCTTGAGAAGATGCGAATGGACAGAAGAGGAGGATTTAAGGCTGGAGATAGCAATTCAGGAACATGGATATAGCTGGACTAAGGTAGCTGCATGTGTGCCGTCACGTACAGATAATGATTGTCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCGTTACTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCTACTGACTTTCGACCCAGGCCAAACACAGATTTATTGTGTAATAGTGTTGATCCAAGACCTGCCCCAAAAAGAAATGTGAAGACGAGAAAGATGCCAGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAAGAAGAGGAAATCAAATTGCCAGAGGAATCAGGCTGATGTAACTGCTCAGGCGGGTATTGCAAATAATACCTCTTCTGTCCCAGAGGAGGTTAAATCTCTAAAGCCTCAAAGAAAACAAAATAGACATGGAGCTTATACCGCAGAAGGGGTTCCGGAGCTATGTCCTAACAGTGAGTGGTGTGCTAAACAGAGTTTGGACACTCAGAGCCTTGGGGTGCAGCTGTCGCTGTTGGAATCTGAGGGGACCAACAGCGACTGCATCGAGACTGTTGATGAGAATGGTATGGAGGTATTTGAGAACAAAGTTGCAGAGAAACTTTCTGAAAGAGATGTATGTTTTCCAGAACCAGAAGCAATTCAAAACTCTACCGGATCTTCTGGAGTCTCGGTATTGTCAGAAATGACTAATGACATGGATGAATACAATCCGTCTATCCTTCCAGATACAACATTGTTGGCTAGTACTACTGTGGATGATCTCAAAGAATTGAAGAGGAAGAGTGTTGCAGACAGAGATCTGGATGACTGTAACAGTTTCTCGTTACCGTGCAGTGACTTGGAACTCAGGACAATCGACAAGGAAGGTGTGGACAGTTATTCCATGGATGAATTTACAGATAAAAGCCATGGGGTTTGCAAGCCCCCCCATACCAGAAGGAAGAAAAACAGCAAAACATCAAGTAAGAGCCAGGATCATTCCTTTGTTTCTTGTCAACAAGTGGAGTTGGAGAGGTTGGGGACAAATGAGCCTCGTCATCATAATCAATCAAAGAAGAGAAAACATAACAGTACAAATACGAATCTGGAGGCAGTTGAGGAGGTTGATGACTGCACACTCGTGGGCTTTTTGCAAAAAAGATTGAAGAGGACGACGACAACAAATGACAAGAAAGTTGATTGCAGTTCAAGTACTCCCATAGAAGTTGATACTGATGACAACGATCCTACCCTTGCCTCGTTTCTTAATAAATTAAAGAGAAAAAAGCATCAGCCGAGTAGTGGTGGTGAGTTAAACTAG 3150 43.49 TLPHAAVVPLPPDFSLRRHRCLFAMIQSGIPTQVLAGIDCVRCAHSCSSMSHRNHDDEGDVELPVSKEDDVVDEDMEALRRAYKHVGVNPEDYINPRLSSPVAGDANPSSDSDDVDDFELLRNIQNRFSCVADEQPLSTLPPMSLDEEEDEFEMLRSIQRRFAAYESDTLSNKPNQLCDHVGSLKMDFDDTAVESQTASKRPSMLAFEKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRFKILKDFQGSCKRRTTCALSQMIDPRVQLISAAKPQAKDSSKKDKRLSAMHYGPAENSHVACYRMALMKFPRVDRKKWSVVERENLGKGIRQQFQEMVLQISVDQISGLQGFSADSDDLDNILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRDPWTTSEDKNLLFTIQQKGLNNWIEIAVSSGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRAAVATFGLGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGHFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWTKVAACVPSRTDNDCRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPTDFRPRPNTDLLCNSVDPRPAPKRNVKTRKMPVSRNEKSATGDAPKKRKSNCQRNQADVTAQAGIANNTSSVPEEVKSLKPQRKQNRHGAYTAEGVPELCPNSEWCAKQSLDTQSLGVQLSLLESEGTNSDCIETVDENGMEVFENKVAEKLSERDVCFPEPEAIQNSTGSSGVSVLSEMTNDMDEYNPSILPDTTLLASTTVDDLKELKRKSVADRDLDDCNSFSLPCSDLELRTIDKEGVDSYSMDEFTDKSHGVCKPPHTRRKKNSKTSSKSQDHSFVSCQQVELERLGTNEPRHHNQSKKRKHNSTNTNLEAVEEVDDCTLVGFLQKRLKRTTTTNDKKVDCSSSTPIEVDTDDNDPTLASFLNKLKRKKHQPSSGGELN 1049
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23439777 23457366 + ClG42_05g0161800.10 Clacu05g1618 249365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1618 1049 ProSiteProfiles Myb-like domain profile. 581 631 IPR001005 -
Clacu05g1618 1049 SUPERFAMILY Homeodomain-like 420 476 IPR009057 -
Clacu05g1618 1049 SMART sant 533 582 IPR001005 -
Clacu05g1618 1049 SMART sant 480 529 IPR001005 -
Clacu05g1618 1049 SMART sant 327 424 IPR001005 -
Clacu05g1618 1049 SMART sant 427 477 IPR001005 -
Clacu05g1618 1049 SMART sant 585 633 IPR001005 -
Clacu05g1618 1049 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 533 580 IPR017930 -
Clacu05g1618 1049 MobiDBLite consensus disorder prediction 939 954 - -
Clacu05g1618 1049 Gene3D - 480 530 - -
Clacu05g1618 1049 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 53 1040 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Clacu05g1618 1049 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 581 635 IPR017930 -
Clacu05g1618 1049 MobiDBLite consensus disorder prediction 94 113 - -
Clacu05g1618 1049 ProSiteProfiles Myb-like domain profile. 476 527 IPR001005 -
Clacu05g1618 1049 ProSiteProfiles SANT domain profile. 479 528 IPR017884 -
Clacu05g1618 1049 ProSiteProfiles Myb-like domain profile. 529 580 IPR001005 -
Clacu05g1618 1049 Gene3D - 425 476 - -
Clacu05g1618 1049 CDD SANT 537 578 IPR001005 -
Clacu05g1618 1049 Gene3D - 531 585 - -
Clacu05g1618 1049 Gene3D - 588 634 - -
Clacu05g1618 1049 MobiDBLite consensus disorder prediction 1002 1026 - -
Clacu05g1618 1049 MobiDBLite consensus disorder prediction 719 741 - -
Clacu05g1618 1049 SUPERFAMILY Homeodomain-like 460 529 IPR009057 -
Clacu05g1618 1049 ProSiteProfiles Myb-like domain profile. 423 475 IPR001005 -
Clacu05g1618 1049 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 476 531 IPR017930 -
Clacu05g1618 1049 MobiDBLite consensus disorder prediction 659 753 - -
Clacu05g1618 1049 MobiDBLite consensus disorder prediction 913 978 - -
Clacu05g1618 1049 Pfam Myb-like DNA-binding domain 586 630 IPR001005 -
Clacu05g1618 1049 Pfam Myb-like DNA-binding domain 481 525 IPR001005 -
Clacu05g1618 1049 Pfam Myb-like DNA-binding domain 428 473 IPR001005 -
Clacu05g1618 1049 Pfam Myb-like DNA-binding domain 534 580 IPR001005 -
Clacu05g1618 1049 CDD SANT 483 527 IPR001005 -
Clacu05g1618 1049 SUPERFAMILY Homeodomain-like 531 627 IPR009057 -
Clacu05g1618 1049 MobiDBLite consensus disorder prediction 695 718 - -
Clacu05g1618 1049 MobiDBLite consensus disorder prediction 1007 1021 - -
Clacu05g1618 1049 CDD SANT 588 631 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1618 K09422 - - csv:101216287 1657.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1618 Clacu-Chr5:23439777 Clacu10g0735 Clacu-Chr10:10491474 0.00E+00 dispersed
Clacu05g1618 Clacu-Chr5:23439777 Clacu06g1809 Clacu-Chr6:28644731 1.20E-15 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu06g1041 . 1 818 MYB-Related Transcription Factor Family AT1G09770 77.6 0.0e+00 1208.7
Clacu05g1618 . 211 663 MYB-Related Transcription Factor Family AT3G18100 57.8 4.1e-150 528.9
Clacu05g1618 . 211 663 MYB-Related Transcription Factor Family AT3G18100 57.8 4.1e-150 528.9
Clacu06g1041 . 1 818 MYB-Related Transcription Factor Family AT1G09770 77.6 0.0e+00 1208.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47705 PF13921 Myb_DNA-bind_6 2.60E-11 CL0123 Clacu TF