Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1622 ATGGAAACCAATCTTCGGCGTTTTAAACGCACCGTTTCAATCGCTGGAGCAGTGCCGTATTCCTCTTTCACACCTCCAATTCCATTGAAGGGATTATCTCCGCCGTCGCCGTCTCCGTCCTATTTCCACCGCCCTCTTCCGGAGTTTCAGAGAGAGAGAGAGAGAAGATCCATCAACATGATCACCCGAACAGTATTTACTGCTTTGAAGAGATCGATTCTTCCATTGTCTTCTCAATTACTCCCGCTCTTCTCCTCCTCCGCATGTCGATCTGCTAGCACGTTGGTTTTGGCGGAACACGATGGCGGTTCCATCAATGCCGCTTCCGTTAGTGCTATAACGGCTGCCGGTTCTTTGAGCAAAGACAGTTCGATTTCCGTCCTGTTGGCTGGCTCAGGGCCTTCGCTTCGGGAAGCTGCCGAACATGCTGCCTCTTGCCACCCGTCTATTTCTCAGGTGCTTGTTGCTGATTCCGATAAATTTACATACCCTTTGGCAGAACCTTGGGCTCAATTAGTTCAATTGGTTCAACAGAAGAATGGATATTCTCATGTAATTGCAGCTTCAGGTTCCTTTGGGAAAAACATTCTTCCACGCGCTGCCGCTCTTTTAGATGTTTCTCCAGTTACTGATGTCGTTGCTATAACTGAATCTCGCCAATTCTTGAGGCCTATATATGCTGGCAATGCGCTTTGTACAGTTAGATACACAGGGGCTGACCCTTGTATGTTGACCATAAGATCTACATCATTCCCAGTGACCTCAAAATCAGTTGAGTCGGCATCATCCAGGTCCCCTATATCTCAGGTTGATCTCTCAACGTTTGGTGGAGATTCTATTGGAAAATCTAGATTTGTAAAGCAAACATCTCAGGAAGCAGAACGTCCTGATCTTGCTAATGCACGGGTTGTTGTCACTGGAGGACGTGGTTTGAAAAGTGCTGAGAACTTCAAAATGATTGAGAAACTTGCAGGGAAACTTGGTGCTGCAGTTGGTGCCACACGTGCTGCTGTCGATGCTGGATTTGTTCCCAATGACCTTCAGGTTGGACAAACTGGTAAAATTGTAGCACCAGAACTATATATTGCTTTTGGTGTATCAGGAGCCATTCAACATTTGGCAGGGATCAGAGACTCTAAGGTTATTGTGGCTGTGAATAAAGATGCAGATGCACCAATATTTAAGGTTGCTGACTATGGACTCGTTGGCGATCTTTTTGAGATTATACCGGAGTTGCTTGAAAAGCTACCTGAAAGTAAATAA 1263 45.92 METNLRRFKRTVSIAGAVPYSSFTPPIPLKGLSPPSPSPSYFHRPLPEFQRERERRSINMITRTVFTALKRSILPLSSQLLPLFSSSACRSASTLVLAEHDGGSINAASVSAITAAGSLSKDSSISVLLAGSGPSLREAAEHAASCHPSISQVLVADSDKFTYPLAEPWAQLVQLVQQKNGYSHVIAASGSFGKNILPRAAALLDVSPVTDVVAITESRQFLRPIYAGNALCTVRYTGADPCMLTIRSTSFPVTSKSVESASSRSPISQVDLSTFGGDSIGKSRFVKQTSQEAERPDLANARVVVTGGRGLKSAENFKMIEKLAGKLGAAVGATRAAVDAGFVPNDLQVGQTGKIVAPELYIAFGVSGAIQHLAGIRDSKVIVAVNKDADAPIFKVADYGLVGDLFEIIPELLEKLPESK 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23645416 23649119 - ClG42_05g0162200.10 Clacu05g1622 249369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1622 420 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 93 260 - -
Clacu05g1622 420 SUPERFAMILY DHS-like NAD/FAD-binding domain 294 416 IPR029035 -
Clacu05g1622 420 FunFam Electron transfer flavoprotein subunit alpha, mitochondrial 93 289 - -
Clacu05g1622 420 Pfam Electron transfer flavoprotein domain 94 272 IPR014730 -
Clacu05g1622 420 CDD ETF_alpha 93 271 IPR033947 -
Clacu05g1622 420 PANTHER ELECTRON TRANSFER FLAVOPROTEIN ALPHA 79 417 IPR001308 GO:0005739(PANTHER)|GO:0009055(PANTHER)|GO:0009055(InterPro)|GO:0033539(PANTHER)|GO:0050660(PANTHER)|GO:0050660(InterPro)
Clacu05g1622 420 Gene3D HUPs 93 283 IPR014729 -
Clacu05g1622 420 Gene3D - 291 418 - -
Clacu05g1622 420 FunFam Electron transfer flavoprotein, alpha subunit 291 419 - -
Clacu05g1622 420 SMART ETF_2 94 279 IPR014730 -
Clacu05g1622 420 Pfam Electron transfer flavoprotein FAD-binding domain 297 377 IPR014731 -
Clacu05g1622 420 ProSitePatterns Electron transfer flavoprotein alpha-subunit signature. 360 386 IPR018206 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1622 K03522 - - csv:101217942 571.237
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g462 Blo03g00578 . Bda07g00344 . . . . . . . . Cma09g00935 . Car09g00848 Sed07g2661 Cpe06g00752 . Bhi09g01931 Tan01g4520 Cmetu04g0908 . Hepe01g1300 Mch11g1164 . . . . . . . . . Cone9ag0097 . . Lsi04g01229 . . . . . . . Bpe11g00529 . . Bma14g00352 . . Cmo09g00932 . . . . . . . . . . . . . Cla05g01520 Cam05g1633 . Cco05g1669 Clacu05g1622 Cmu05g1520 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009641 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 1 1 1 32