Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1625 ATGCATGTTTGCTGCAAGAAAGACCCAAAATTGAAGCAAAAAGCACCAAAGAAGACCAAGTTTTTAGGTCGACAAAACGGCGATCTCTCGCTCACCTACGACGTCATCCAAGCTTATGGGAATAACTATCTTGCACAAGTCAGCATTGACAACAACAACCCTCTTGGCCGCCTCGACCATTGGAACTTAACTTGGGAATGGATGAGAGGAGAATTCATTTCCACCATGAGAGGAGCTTACACTCACAAAATTGACTACTCTGACTGCATCTTTGGCCCTCAAGCCCAATACTATCAAGATTTTGACTTCTCCCAAATCATGAATTGTGAGAAGAACCCCATCATCGCCGACCTCCCTTCCGATCGAGCCAACGATTCCAAGGTCGGAAAGTTACCCTTCTGTTGCAACAACGGCACCATCTTACCGCCACTGATGGATCCAAGCAAAGCAAGGTCCATTTTTCAGCTCCAAGTCTATAAGCTTCCCCCTGACTTCAACAGAACAGCCTTGTACCCTCCTCAAAAATGGAAGATCAACGGCATTCTTAACCCCAATTACAAATGTGGAGCTCCTATTAGAGTTGATCCAACACAATTTCCTGACTCAACTGGACTTCAATCCATAACCACAGCCATTGCAAGTTGGCAAGTGGTTTGCAATATTACTACTCCAAAACCCAAACAATCAAGATGTTGTGTTTCTTTCTCTGCTTATTATAATGACTCTGTTATCCCTTGCAATACTTGTGCTTGTGGATGTGATCAAACTCAAACTTGCAACCCAAATTCTTCCCCATTGCTTCTTCCACCAGAGGCCCTTTTAGTTCCATTTGACAATAGAACTCTAAAGGCAAAAGCTTGGGCCAAAATCAAACACTTTCCAATTCCAAAGAAACTCCCTTGTCCTGACAATTGTGGGGTTAGTTTAAATTGGCATATAAACTCAGATTATAACAGTGGTTGGACGGCTAGAATTACCCTTTTCAATTGGGAAGAATACCCTTTTGAGGAATGGTTTGCTGCTGTTCAATTGGATAAAGCTGCTAAAGGCTATGAGAATGTCTACTCTTTCAATGGGACTAAACTCCCACCAGATATGATCAAGAACACCATCTTTTTCCAAGGATTGGAAGGTCTTAATTACCTGATGGGGGAGATGAATGGGACGGACCCGAGATTCGATCCTCGAGTACCGGGAAAGCAACAATCGGTAATCTCTTTCACTAAGAAGAATTTGAGGAACCTCAATATAAAGGAAGGAGATGGATTCCCTTCAAAGGTTTATTTCAATGGAGAAGAATGTGCACTTCCTCCTCATATTCCTTTAGGAAATGGTGCTGCTCACAGCCTCCATGTCAGCTCTGAACCTTTAATGCTGCTGCTCACAGTTATGGCTTTTTTCATTCTCTTCATCGATGGCTTTCATTGA 1428 42.79 MHVCCKKDPKLKQKAPKKTKFLGRQNGDLSLTYDVIQAYGNNYLAQVSIDNNNPLGRLDHWNLTWEWMRGEFISTMRGAYTHKIDYSDCIFGPQAQYYQDFDFSQIMNCEKNPIIADLPSDRANDSKVGKLPFCCNNGTILPPLMDPSKARSIFQLQVYKLPPDFNRTALYPPQKWKINGILNPNYKCGAPIRVDPTQFPDSTGLQSITTAIASWQVVCNITTPKPKQSRCCVSFSAYYNDSVIPCNTCACGCDQTQTCNPNSSPLLLPPEALLVPFDNRTLKAKAWAKIKHFPIPKKLPCPDNCGVSLNWHINSDYNSGWTARITLFNWEEYPFEEWFAAVQLDKAAKGYENVYSFNGTKLPPDMIKNTIFFQGLEGLNYLMGEMNGTDPRFDPRVPGKQQSVISFTKKNLRNLNIKEGDGFPSKVYFNGEECALPPHIPLGNGAAHSLHVSSEPLMLLLTVMAFFILFIDGFH 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23680816 23682243 - ClG42_05g0162500.10 Clacu05g1625 249372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1625 475 PANTHER COBRA-LIKE PROTEIN 7 1 466 - -
Clacu05g1625 475 PIRSF COBRA 22 472 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Clacu05g1625 475 Pfam COBRA-like protein 43 222 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1625 Clacu-Chr5:23680816 Clacu10g0543 Clacu-Chr10:6565218 2.50E-223 dispersed
Clacu05g1625 Clacu-Chr5:23680816 Clacu06g1654 Clacu-Chr6:27315643 3.90E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1625 - - - 0.0