Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1640 ATGGTATCCCCCGAAAATCCCAATTGGTTGTTTGATTATGGTTTGATCGACGACATCCCTGTACCGGATGCGAATTTCCCGGTCACGAGTTCAAGCTTCTCCTGGGCTATTCAGCCCTTTAACGGCATCCATGATACCGGTGTGGAAATTGAGGGATCATTGGCAGATCTGGATGACCGTCTAGAATCTGGCTCAAAAAAGAGGGTCAGATCTGATTCATGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAATTGCGGAGGGATAGGCTCAATGACAAGTTTCTGGAACTGGGCTCCATTTTGGATCCTGGAAGACCGCCCAAAACTGACAAGGCTGCAATTTTAGTTGACGCGGTTCGAATGGTGAATCAGTTGCGTAGCGAAACACAGAAACTAAAGGAATCAAATTCAAGTCTCCAGGAGAAGATTAAAGAGTTGAAGGCCGAGAAGAACGAGCTTCGTGACGAGAAGCAGAGGCTCAAGGCAGATAAGGAGAGGCTAGAGCAGCAAGTCAAGTCCATGCCTGCTCAACAACCGGGCTTCTTACCTCCACCAATCCCCACATTTGCTGCTCAGGGTCAAGCTCCTGGCAATAAGTTAGTTCCTTTCATTGGTTACCACCCAAGTGTTGCCATGTGGCAGTTCATGCCACCTGCTGCGGTGGACACGTCACAGGACCACGTACTCCGGCCACCCGTCGCATAA 708 49.44 MVSPENPNWLFDYGLIDDIPVPDANFPVTSSSFSWAIQPFNGIHDTGVEIEGSLADLDDRLESGSKKRVRSDSCSASSSKACREKLRRDRLNDKFLELGSILDPGRPPKTDKAAILVDAVRMVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSMPAQQPGFLPPPIPTFAAQGQAPGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24311359 24313680 - ClG42_05g0164000.10 Clacu05g1640 249387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1640 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 146 IPR036638 GO:0046983(InterPro)
Clacu05g1640 235 Pfam Helix-loop-helix DNA-binding domain 79 127 IPR011598 GO:0046983(InterPro)
Clacu05g1640 235 Gene3D - 65 124 IPR036638 GO:0046983(InterPro)
Clacu05g1640 235 FunFam Transcription factor bHLH34 66 124 - -
Clacu05g1640 235 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 179 - -
Clacu05g1640 235 CDD bZIP 141 173 - -
Clacu05g1640 235 CDD bHLH_AtILR3_like 83 155 - -
Clacu05g1640 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983(InterPro)
Clacu05g1640 235 Coils Coil 123 178 - -
Clacu05g1640 235 PANTHER BHLH TRANSCRIPTION FACTOR 8 235 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Clacu05g1640 235 SMART finulus 81 132 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2095 Clacu-Chr1:32658842 Clacu05g1640 Clacu-Chr5:24311359 1.10E-09 transposed
Clacu02g1175 Clacu-Chr2:23659796 Clacu05g1640 Clacu-Chr5:24311359 6.10E-10 transposed
Clacu05g0491 Clacu-Chr5:4105657 Clacu05g1640 Clacu-Chr5:24311359 2.50E-29 transposed
Clacu10g0558 Clacu-Chr10:6745905 Clacu05g1640 Clacu-Chr5:24311359 5.40E-78 transposed
Clacu02g0860 Clacu-Chr2:10316964 Clacu05g1640 Clacu-Chr5:24311359 2.30E-55 wgd
Clacu03g0509 Clacu-Chr3:5334365 Clacu05g1640 Clacu-Chr5:24311359 1.60E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47706 PF00010 HLH 1.10E-09 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1640 - - - 0.0