Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1644 ATGGCACGACGAGAGCAGCAACACGACGAGCGACATCCAGTGGGCATGTGGTTGAGCGGGGTGCTTTTGTCCAACAACGAAATTCCGCCTTCTTTCCAACGCGTTTGGTCAAATGTTTGTAACGTCGCCCAATTCTTCGACCTTCTTTTGGTGGATCTGGTCAGAATCGGAGACCCATTGGAGGCCTTTCCACTCCGCTTACTTTTGATTTTCTGTCAAAAATGGGATTGCATTATGCGATTCTGTTTCTTTCAAGGGTTTTCTTCTTGCCCTTTTCCCCAATTCTTTCTCGGATTTTGTTTTGATCATTGGGATTCGTCATCTTCCAGCTATGTTTTCCGATTTTTATCACAAATTCTTCTTGGGTTTGCTCAGGGATTTTTGTTTACTTGTTGTCTTTTGACGTTCTGGGATTTCGAGGCAACTTGCTTGAAGGACCACGAGGAAGAGGAACTGATTCTGAGTCAACTAGCTGACCCAATTACTGGGGATGTCAACACAGAGATGGCTGAGCTGTTACTTGTTAAGTGCAACTTGGATTTGTTTCAGTTAAAGGAAGCTGCAGATGGTACTGACCTATGCTTTGAAGAAAGACCTGGAAGCAAAAATGGAATTAATTTTGAATGTCGGATGCTGACAAAAGAGAAAACAAACAGAATGCTAAGGGCCATGCATCCCCAGATGAAGCAGACTCTTTTAGATTGTTTAAGAAAGAATTTTCATGTCTCTGGGAAAGACTACAACTCTGAAGCTTGGTACACCAGGTATCTAGAGTCATTGTTTTTAATGCCTGGTAGTCTTAGAAGGAAGTTAAGTTCTAGATGGCTTCGAAGTTCTAAAGAAGTGCCTGCTCCGGCACCTGAATCTTCAGCAGATGAAAAACCTTCAAGAAAAGCTTCTAGCACAAGTGGTCAAAAAGAAAAGAAATCTAATAATCAACAAACAGTCATCATCGCTGTTGTTGTAACCGCAACAGTGACTTTTATTATTGTAGCTCTGCTATTTTTATGCTATAATAAAAGTGGTTCCAGAGTGAAGCAAAATGATGAAAATCATGAAAGGCCTCTCCTAAGCTTGAGTTTAAGTTCTTCGCCCAAATATTCTGCCTTTGGGAATTCTCTTAAGGATGACAAGTTCATGAGTCAATCATCTAGCTTGAGTCACCACCAGAGAGCTCCATCTTTGGATGGTAACCTGCACATTGTCTCTGATGGTGCACGTACTTCAATGCAGGGACCTCCGTCTTTTGGAGCTACTGGAATTCCGAATAATTCATCTTTTGGATCAACAAATATGGCTGGCAGTACTAAGGGTTTGGTGCCACCTCCTCCAGGAGCAGTACCAGTCACCCCAGAAATCATACCTCCTTTGAAGCCTCCTCCTGGCAGGGCTGTTCCCCTGCCTCCTGAACGCCCTTCGTCTTTTAAGCCTCCATCCAACATGGCTAGTCCTCCTCCTCCTCCTCCTCCACCTCCTGCTGCTGCTGCAGCAGCAGCACCACCACCACCACCACCACCAAGACCTCCTGGAAATTCATGTCGCCCTCCAGGACCTCCTCCACCTCCACCACCTGCACCAGGCAAAGCAGGCCCTCGCCCACCACCACCTCCCAAAAGTGGTATTGCTCCTCCTCGGCCACCTCCATTAGCACCCAAAGGTGCAAATCCACCTCGACCTCCAAAGCCTTTTGCTTCAGGTGATGATGATATGGACGAATCAGGTGTTCCCAAAGCCAAATTGAAACCATTTTTCTGGGACAAAGTTCTTGCAAACCCCGACCATTCCATGGTCTGGCATCAGATAAAAGCAGGGTCTTTCCAATTCAACGAGGAGATGATAGAAACTCTTTTTGGATATACGCCTGTAGATAAAACCAAAACTGAGGGCAAGAAGGAGTCATCATCACAAGATCCTGCACAGCTGTACATTCAGATCATTGATTCAAAGAAAGCACAAAATCTTTCCATTCTTTTGCGAGCACTAAATGTGACAAAAGAAGAAGTCTGTGATGCGCTTCATGAAGGGACTGAACTTCCTTCTGAACTTCTTGAGAACTTACTGAGGATGGCACCAACTCCAGAAGAAGAACTCAAGCTTAGACTGTTTAGTGGGGAACTTTCTCAACTTGGAAATGCTGAGCGGTTCCTTAAATCTTTGGTTGATATCCCATTTGCTTTCAAAAGGTTGGAATCGCTGCTTTTCATGGGCACTCTTCAGGAGGACATCACCATCACTAAAGAGTCCTTTGCTAATTTGGAGGTTGCTTGCAAGGAACTTCGGAGCAGCAGGTTGTTCCTCAAACTTCTAGAAGCTGTTCTAAAGACGGGCAATCGGATGAACGATGGGACTTTTCGAGGTGGTGCACAAGCATTCAAATTGGACACTCTTTTAAAATTGTCGGATGTGAAAGGAAAAGATGGCAAAACTACGTTATTGCACTTTGTAGTTCAGGAGATAATTCGCACAGAAGGGATAAGAGCTGTTCGGAATGCCACAGGAAGCCAGAGCTTCTCAAGCACCTCATCAAAGGATCTGCTGGATGGATCTCCTAACGACCCCGAGGAGCATTACCGTACCTTGGGTCTTCAGGTTGTCTCGGGGCTGAGTGGTGAACTTCAGAATGTGAAGAAAGCAGCAACCATTGATGCAGATGCGTTGACTGGAACTGTTACCAAACTTGGCCATGCACTGTTAAAGACAAGAGACTTTCTGAACAAAGACATGCAGGGTTTAGGTGAAGAGAGCCCATTTTATGATGCACTGAAAGTCTTTGTGCAGAGTGCTGAGGTTGATATCATGGCCCTCCTGGAAGAAGAAAAAAGAATCATGGAGTTGGTGAAAAGCACGGGCGACTACTTCCATGGAAATGCAGGGAAGGACGAGGGCTTACGGTTGTTTGTAATCGTACGAGATTTCTTGATAATGATAGATAAGACGTGCCGAGAAATAAAGGATGCACAGAAAAAGCAAGCGAAGGGACACAGAAAGGCAGCATCGTCTTCTGATATCCATCACCCCCTTTCGTCGTCTTCTGATATCAATCAGCCCCCTTTGTCGTCTACTGATACCAATCACCCCCCTTCGTCGTCTACTGATACCAATCACCCCCCTTCGTCGTCTACCGATACCAATCACCCCCCTTCGTCGTCTACCAATACCAGTCATCCCCCATCATCGTCTACCGGTACCAATCACCCCCCATCGTCGTCTACCGATACCAATCACCCCCCTTCAACTATAGCTTCTGATCTACGACACCCCCCTTCTCCTGATTTGAATCAGCTGATTTTCCCAGCAATTATTGATCGTCGGATGGGCAACTCAAGTTCAGACGATGATGAAAGTCCGTAG 3351 45.63 MARREQQHDERHPVGMWLSGVLLSNNEIPPSFQRVWSNVCNVAQFFDLLLVDLVRIGDPLEAFPLRLLLIFCQKWDCIMRFCFFQGFSSCPFPQFFLGFCFDHWDSSSSSYVFRFLSQILLGFAQGFLFTCCLLTFWDFEATCLKDHEEEELILSQLADPITGDVNTEMAELLLVKCNLDLFQLKEAADGTDLCFEERPGSKNGINFECRMLTKEKTNRMLRAMHPQMKQTLLDCLRKNFHVSGKDYNSEAWYTRYLESLFLMPGSLRRKLSSRWLRSSKEVPAPAPESSADEKPSRKASSTSGQKEKKSNNQQTVIIAVVVTATVTFIIVALLFLCYNKSGSRVKQNDENHERPLLSLSLSSSPKYSAFGNSLKDDKFMSQSSSLSHHQRAPSLDGNLHIVSDGARTSMQGPPSFGATGIPNNSSFGSTNMAGSTKGLVPPPPGAVPVTPEIIPPLKPPPGRAVPLPPERPSSFKPPSNMASPPPPPPPPPAAAAAAAPPPPPPPRPPGNSCRPPGPPPPPPPAPGKAGPRPPPPPKSGIAPPRPPPLAPKGANPPRPPKPFASGDDDMDESGVPKAKLKPFFWDKVLANPDHSMVWHQIKAGSFQFNEEMIETLFGYTPVDKTKTEGKKESSSQDPAQLYIQIIDSKKAQNLSILLRALNVTKEEVCDALHEGTELPSELLENLLRMAPTPEEELKLRLFSGELSQLGNAERFLKSLVDIPFAFKRLESLLFMGTLQEDITITKESFANLEVACKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGKDGKTTLLHFVVQEIIRTEGIRAVRNATGSQSFSSTSSKDLLDGSPNDPEEHYRTLGLQVVSGLSGELQNVKKAATIDADALTGTVTKLGHALLKTRDFLNKDMQGLGEESPFYDALKVFVQSAEVDIMALLEEEKRIMELVKSTGDYFHGNAGKDEGLRLFVIVRDFLIMIDKTCREIKDAQKKQAKGHRKAASSSDIHHPLSSSSDINQPPLSSTDTNHPPSSSTDTNHPPSSSTDTNHPPSSSTNTSHPPSSSTGTNHPPSSSTDTNHPPSTIASDLRHPPSPDLNQLIFPAIIDRRMGNSSSDDDESP 1116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24451291 24458971 + ClG42_05g0164400.10 Clacu05g1644 249391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1644 1116 Gene3D Formin, FH2 domain 575 1005 IPR042201 -
Clacu05g1644 1116 MobiDBLite consensus disorder prediction 831 847 - -
Clacu05g1644 1116 MobiDBLite consensus disorder prediction 278 310 - -
Clacu05g1644 1116 MobiDBLite consensus disorder prediction 831 852 - -
Clacu05g1644 1116 MobiDBLite consensus disorder prediction 441 563 - -
Clacu05g1644 1116 MobiDBLite consensus disorder prediction 987 1094 - -
Clacu05g1644 1116 PANTHER FORMIN-RELATED 280 1113 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Clacu05g1644 1116 SUPERFAMILY Formin homology 2 domain (FH2 domain) 519 994 - -
Clacu05g1644 1116 MobiDBLite consensus disorder prediction 407 575 - -
Clacu05g1644 1116 SMART it6_source 570 990 IPR015425 -
Clacu05g1644 1116 Pfam Formin Homology 2 Domain 576 975 IPR015425 -
Clacu05g1644 1116 MobiDBLite consensus disorder prediction 1002 1080 - -
Clacu05g1644 1116 ProSiteProfiles Formin homology-2 (FH2) domain profile. 570 1002 IPR015425 -
Clacu05g1644 1116 MobiDBLite consensus disorder prediction 407 436 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1644 K28090 - - csv:101213072 923.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1644 Clacu-Chr5:24451291 Clacu11g0239 Clacu-Chr11:2148295 1.30E-97 dispersed
Clacu03g1743 Clacu-Chr3:31205771 Clacu05g1644 Clacu-Chr5:24451291 6.60E-100 transposed
Clacu05g2694 Clacu-Chr5:34513705 Clacu05g1644 Clacu-Chr5:24451291 2.00E-82 transposed
Clacu07g0232 Clacu-Chr7:2756530 Clacu05g1644 Clacu-Chr5:24451291 5.70E-98 transposed
Clacu08g1041 Clacu-Chr8:20438740 Clacu05g1644 Clacu-Chr5:24451291 2.90E-71 transposed
Clacu02g0858 Clacu-Chr2:10289006 Clacu05g1644 Clacu-Chr5:24451291 1.40E-153 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g414 Blo03g00585 Blo03g01433 Bda07g00336 Bda09g00382 . Bpe08g01143 . . . . Cma01g01155 Cma09g00921 . Car09g00837 . Cpe06g00740 Cpe02g00746 Bhi09g01953 . . . Hepe01g1315 . . . . . . . . . . Cone9ag0106 . . Lsi04g01249 . Chy04g01020 . . . . . Bpe11g00522 . Bma07g01317 Bma14g00359 . Cmo01g01208 Cmo09g00918 . . . Car16g00567 . . . . . . . . . Cla05g01545 Cam05g1653 Cec05g1657 Cco05g1695 Clacu05g1644 Cmu05g1539 Cre05g1650 . . . Cme04g00799
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu07g0232 . 181 1055 FH2 protein (formin) Gene Family AT3G25500 51.7 3.6e-190 662.5
Clacu11g0239 . 459 935 FH2 protein (formin) Gene Family AT3G25500 66.9 2.1e-166 583.6
Clacu02g1252 . 446 902 FH2 protein (formin) Gene Family AT3G25500 60.1 8.2e-142 501.9
Clacu03g1743 . 496 893 FH2 protein (formin) Gene Family AT3G25500 51.7 3.0e-104 377.1
Clacu07g0232 . 618 1072 FH2 protein (formin) Gene Family AT2G43800 60.1 1.3e-140 497.7
Clacu02g1252 . 480 918 FH2 protein (formin) Gene Family AT2G43800 55.1 9.1e-126 448.4
Clacu02g0858 . 283 595 FH2 protein (formin) Gene Family AT4G15200 54.1 3.5e-52 203.0
Clacu05g1644 . 564 710 FH2 protein (formin) Gene Family AT4G15200 66.9 1.3e-46 184.5
Clacu05g1644 . 565 1001 FH2 protein (formin) Gene Family AT5G54650 68.9 2.8e-167 586.3
Clacu02g0858 . 449 912 FH2 protein (formin) Gene Family AT5G54650 63.1 4.1e-158 555.8
Clacu07g0232 . 629 1030 FH2 protein (formin) Gene Family AT5G54650 50.6 7.1e-102 369.0
Clacu02g1252 . 31 921 FH2 protein (formin) Gene Family AT5G67470 58.3 2.2e-236 815.8
Clacu07g0232 . 610 1072 FH2 protein (formin) Gene Family AT5G67470 58.9 9.8e-136 481.5
Clacu11g0239 . 472 917 FH2 protein (formin) Gene Family AT5G67470 60.6 1.1e-131 468.0
Clacu03g1743 . 496 895 FH2 protein (formin) Gene Family AT5G67470 50.9 8.9e-105 378.6
Clacu05g2694 . 349 832 FH2 protein (formin) Gene Family AT1G59910 52.1 7.3e-126 448.7
Clacu07g0232 . 650 1031 FH2 protein (formin) Gene Family AT5G48360 52.3 9.8e-100 361.7
Clacu02g1252 . 504 879 FH2 protein (formin) Gene Family AT5G48360 50.5 1.6e-89 327.8
Clacu02g1252 . 484 878 FH2 protein (formin) Gene Family AT3G05470 52.0 3.6e-106 383.3
Clacu05g1644 . 570 984 FH2 protein (formin) Gene Family AT3G05470 50.4 6.1e-106 382.5
Clacu07g0225 . 982 1293 FH2 protein (formin) Gene Family AT1G42980 50.8 5.9e-69 258.1
Clacu07g0225 . 1 1300 FH2 protein (formin) Gene Family AT1G31810 65.9 0.0e+00 1225.3
Clacu06g1324 . 1 1245 FH2 protein (formin) Gene Family AT1G31810 51.0 1.4e-241 833.6
Clacu06g1702 . 1398 1719 FH2 protein (formin) Gene Family AT5G07650 74.8 1.6e-129 460.7
Clacu04g1265 . 980 1290 FH2 protein (formin) Gene Family AT5G07650 70.4 1.1e-119 427.9
Clacu06g1324 . 935 1254 FH2 protein (formin) Gene Family AT5G07650 62.9 1.1e-109 394.8
Clacu07g0225 . 966 1297 FH2 protein (formin) Gene Family AT5G07650 59.6 3.4e-108 389.8
Clacu05g1785 . 1087 1445 FH2 protein (formin) Gene Family AT5G07650 55.4 4.3e-95 346.3
Clacu06g1702 . 1325 1712 FH2 protein (formin) Gene Family AT5G07770 69.2 1.5e-140 496.9
Clacu04g1265 . 903 1290 FH2 protein (formin) Gene Family AT5G07770 63.2 2.9e-128 456.1
Clacu06g1324 . 858 1246 FH2 protein (formin) Gene Family AT5G07770 57.3 4.3e-116 415.6
Clacu07g0225 . 902 1291 FH2 protein (formin) Gene Family AT5G07770 55.2 2.8e-115 412.9
Clacu05g1785 . 1011 1437 FH2 protein (formin) Gene Family AT5G07770 51.4 5.5e-103 372.1
Clacu05g1785 . 1003 1445 FH2 protein (formin) Gene Family AT3G32400 65.6 1.5e-149 526.6
Clacu06g1324 . 865 1255 FH2 protein (formin) Gene Family AT3G32400 69.2 2.8e-148 522.3
Clacu06g1702 . 1325 1719 FH2 protein (formin) Gene Family AT3G32400 65.2 8.6e-142 500.7
Clacu07g0225 . 902 1296 FH2 protein (formin) Gene Family AT3G32400 65.5 9.5e-141 497.3
Clacu04g1265 . 873 1293 FH2 protein (formin) Gene Family AT3G32400 58.1 8.0e-132 467.6
Clacu06g1324 . 1 1255 FH2 protein (formin) Gene Family AT2G25050 53.6 2.0e-290 995.7
Clacu06g1702 . 1326 1719 FH2 protein (formin) Gene Family AT5G07780 63.0 1.7e-123 439.9
Clacu04g1265 . 904 1293 FH2 protein (formin) Gene Family AT5G07780 58.1 2.1e-113 406.4
Clacu07g0225 . 903 1292 FH2 protein (formin) Gene Family AT5G07780 52.0 8.1e-102 367.9
Clacu06g1324 . 865 1254 FH2 protein (formin) Gene Family AT5G07780 53.8 1.8e-101 366.7
Clacu06g1702 . 1 1728 FH2 protein (formin) Gene Family AT5G07740 60.3 0.0e+00 1132.9
Clacu06g1702 . 1397 1726 FH2 protein (formin) Gene Family AT5G07760 74.4 3.2e-128 456.4
Clacu04g1265 . 979 1293 FH2 protein (formin) Gene Family AT5G07760 69.6 2.6e-117 420.2
Clacu06g1324 . 934 1254 FH2 protein (formin) Gene Family AT5G07760 64.7 5.2e-110 396.0
Clacu07g0225 . 976 1297 FH2 protein (formin) Gene Family AT5G07760 60.1 3.9e-105 379.8
Clacu05g1785 . 1086 1454 FH2 protein (formin) Gene Family AT5G07760 54.0 8.9e-94 342.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001056 4 3 4 4 4 2 4 2 2 2 2 2 4 2 2 3 2 4 4 2 2 2 2 2 3 2 2 3 3 2 81