Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1644 ATGGCACGACGAGAGCAGCAACACGACGAGCGACATCCAGTGGGCATGTGGTTGAGCGGGGTGCTTTTGTCCAACAACGAAATTCCGCCTTCTTTCCAACGCGTTTGGTCAAATGTTTGTAACGTCGCCCAATTCTTCGACCTTCTTTTGGTGGATCTGGTCAGAATCGGAGACCCATTGGAGGCCTTTCCACTCCGCTTACTTTTGATTTTCTGTCAAAAATGGGATTGCATTATGCGATTCTGTTTCTTTCAAGGGTTTTCTTCTTGCCCTTTTCCCCAATTCTTTCTCGGATTTTGTTTTGATCATTGGGATTCGTCATCTTCCAGCTATGTTTTCCGATTTTTATCACAAATTCTTCTTGGGTTTGCTCAGGGATTTTTGTTTACTTGTTGTCTTTTGACGTTCTGGGATTTCGAGGCAACTTGCTTGAAGGACCACGAGGAAGAGGAACTGATTCTGAGTCAACTAGCTGACCCAATTACTGGGGATGTCAACACAGAGATGGCTGAGCTGTTACTTGTTAAGTGCAACTTGGATTTGTTTCAGTTAAAGGAAGCTGCAGATGGTACTGACCTATGCTTTGAAGAAAGACCTGGAAGCAAAAATGGAATTAATTTTGAATGTCGGATGCTGACAAAAGAGAAAACAAACAGAATGCTAAGGGCCATGCATCCCCAGATGAAGCAGACTCTTTTAGATTGTTTAAGAAAGAATTTTCATGTCTCTGGGAAAGACTACAACTCTGAAGCTTGGTACACCAGGTATCTAGAGTCATTGTTTTTAATGCCTGGTAGTCTTAGAAGGAAGTTAAGTTCTAGATGGCTTCGAAGTTCTAAAGAAGTGCCTGCTCCGGCACCTGAATCTTCAGCAGATGAAAAACCTTCAAGAAAAGCTTCTAGCACAAGTGGTCAAAAAGAAAAGAAATCTAATAATCAACAAACAGTCATCATCGCTGTTGTTGTAACCGCAACAGTGACTTTTATTATTGTAGCTCTGCTATTTTTATGCTATAATAAAAGTGGTTCCAGAGTGAAGCAAAATGATGAAAATCATGAAAGGCCTCTCCTAAGCTTGAGTTTAAGTTCTTCGCCCAAATATTCTGCCTTTGGGAATTCTCTTAAGGATGACAAGTTCATGAGTCAATCATCTAGCTTGAGTCACCACCAGAGAGCTCCATCTTTGGATGGTAACCTGCACATTGTCTCTGATGGTGCACGTACTTCAATGCAGGGACCTCCGTCTTTTGGAGCTACTGGAATTCCGAATAATTCATCTTTTGGATCAACAAATATGGCTGGCAGTACTAAGGGTTTGGTGCCACCTCCTCCAGGAGCAGTACCAGTCACCCCAGAAATCATACCTCCTTTGAAGCCTCCTCCTGGCAGGGCTGTTCCCCTGCCTCCTGAACGCCCTTCGTCTTTTAAGCCTCCATCCAACATGGCTAGTCCTCCTCCTCCTCCTCCTCCACCTCCTGCTGCTGCTGCAGCAGCAGCACCACCACCACCACCACCACCAAGACCTCCTGGAAATTCATGTCGCCCTCCAGGACCTCCTCCACCTCCACCACCTGCACCAGGCAAAGCAGGCCCTCGCCCACCACCACCTCCCAAAAGTGGTATTGCTCCTCCTCGGCCACCTCCATTAGCACCCAAAGGTGCAAATCCACCTCGACCTCCAAAGCCTTTTGCTTCAGGTGATGATGATATGGACGAATCAGGTGTTCCCAAAGCCAAATTGAAACCATTTTTCTGGGACAAAGTTCTTGCAAACCCCGACCATTCCATGGTCTGGCATCAGATAAAAGCAGGGTCTTTCCAATTCAACGAGGAGATGATAGAAACTCTTTTTGGATATACGCCTGTAGATAAAACCAAAACTGAGGGCAAGAAGGAGTCATCATCACAAGATCCTGCACAGCTGTACATTCAGATCATTGATTCAAAGAAAGCACAAAATCTTTCCATTCTTTTGCGAGCACTAAATGTGACAAAAGAAGAAGTCTGTGATGCGCTTCATGAAGGGACTGAACTTCCTTCTGAACTTCTTGAGAACTTACTGAGGATGGCACCAACTCCAGAAGAAGAACTCAAGCTTAGACTGTTTAGTGGGGAACTTTCTCAACTTGGAAATGCTGAGCGGTTCCTTAAATCTTTGGTTGATATCCCATTTGCTTTCAAAAGGTTGGAATCGCTGCTTTTCATGGGCACTCTTCAGGAGGACATCACCATCACTAAAGAGTCCTTTGCTAATTTGGAGGTTGCTTGCAAGGAACTTCGGAGCAGCAGGTTGTTCCTCAAACTTCTAGAAGCTGTTCTAAAGACGGGCAATCGGATGAACGATGGGACTTTTCGAGGTGGTGCACAAGCATTCAAATTGGACACTCTTTTAAAATTGTCGGATGTGAAAGGAAAAGATGGCAAAACTACGTTATTGCACTTTGTAGTTCAGGAGATAATTCGCACAGAAGGGATAAGAGCTGTTCGGAATGCCACAGGAAGCCAGAGCTTCTCAAGCACCTCATCAAAGGATCTGCTGGATGGATCTCCTAACGACCCCGAGGAGCATTACCGTACCTTGGGTCTTCAGGTTGTCTCGGGGCTGAGTGGTGAACTTCAGAATGTGAAGAAAGCAGCAACCATTGATGCAGATGCGTTGACTGGAACTGTTACCAAACTTGGCCATGCACTGTTAAAGACAAGAGACTTTCTGAACAAAGACATGCAGGGTTTAGGTGAAGAGAGCCCATTTTATGATGCACTGAAAGTCTTTGTGCAGAGTGCTGAGGTTGATATCATGGCCCTCCTGGAAGAAGAAAAAAGAATCATGGAGTTGGTGAAAAGCACGGGCGACTACTTCCATGGAAATGCAGGGAAGGACGAGGGCTTACGGTTGTTTGTAATCGTACGAGATTTCTTGATAATGATAGATAAGACGTGCCGAGAAATAAAGGATGCACAGAAAAAGCAAGCGAAGGGACACAGAAAGGCAGCATCGTCTTCTGATATCCATCACCCCCTTTCGTCGTCTTCTGATATCAATCAGCCCCCTTTGTCGTCTACTGATACCAATCACCCCCCTTCGTCGTCTACTGATACCAATCACCCCCCTTCGTCGTCTACCGATACCAATCACCCCCCTTCGTCGTCTACCAATACCAGTCATCCCCCATCATCGTCTACCGGTACCAATCACCCCCCATCGTCGTCTACCGATACCAATCACCCCCCTTCAACTATAGCTTCTGATCTACGACACCCCCCTTCTCCTGATTTGAATCAGCTGATTTTCCCAGCAATTATTGATCGTCGGATGGGCAACTCAAGTTCAGACGATGATGAAAGTCCGTAG 3351 45.63 MARREQQHDERHPVGMWLSGVLLSNNEIPPSFQRVWSNVCNVAQFFDLLLVDLVRIGDPLEAFPLRLLLIFCQKWDCIMRFCFFQGFSSCPFPQFFLGFCFDHWDSSSSSYVFRFLSQILLGFAQGFLFTCCLLTFWDFEATCLKDHEEEELILSQLADPITGDVNTEMAELLLVKCNLDLFQLKEAADGTDLCFEERPGSKNGINFECRMLTKEKTNRMLRAMHPQMKQTLLDCLRKNFHVSGKDYNSEAWYTRYLESLFLMPGSLRRKLSSRWLRSSKEVPAPAPESSADEKPSRKASSTSGQKEKKSNNQQTVIIAVVVTATVTFIIVALLFLCYNKSGSRVKQNDENHERPLLSLSLSSSPKYSAFGNSLKDDKFMSQSSSLSHHQRAPSLDGNLHIVSDGARTSMQGPPSFGATGIPNNSSFGSTNMAGSTKGLVPPPPGAVPVTPEIIPPLKPPPGRAVPLPPERPSSFKPPSNMASPPPPPPPPPAAAAAAAPPPPPPPRPPGNSCRPPGPPPPPPPAPGKAGPRPPPPPKSGIAPPRPPPLAPKGANPPRPPKPFASGDDDMDESGVPKAKLKPFFWDKVLANPDHSMVWHQIKAGSFQFNEEMIETLFGYTPVDKTKTEGKKESSSQDPAQLYIQIIDSKKAQNLSILLRALNVTKEEVCDALHEGTELPSELLENLLRMAPTPEEELKLRLFSGELSQLGNAERFLKSLVDIPFAFKRLESLLFMGTLQEDITITKESFANLEVACKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGKDGKTTLLHFVVQEIIRTEGIRAVRNATGSQSFSSTSSKDLLDGSPNDPEEHYRTLGLQVVSGLSGELQNVKKAATIDADALTGTVTKLGHALLKTRDFLNKDMQGLGEESPFYDALKVFVQSAEVDIMALLEEEKRIMELVKSTGDYFHGNAGKDEGLRLFVIVRDFLIMIDKTCREIKDAQKKQAKGHRKAASSSDIHHPLSSSSDINQPPLSSTDTNHPPSSSTDTNHPPSSSTDTNHPPSSSTNTSHPPSSSTGTNHPPSSSTDTNHPPSTIASDLRHPPSPDLNQLIFPAIIDRRMGNSSSDDDESP 1116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24451291 24458971 + ClG42_05g0164400.10 Clacu05g1644 249391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1644 1116 Gene3D Formin, FH2 domain 575 1005 IPR042201 -
Clacu05g1644 1116 MobiDBLite consensus disorder prediction 831 847 - -
Clacu05g1644 1116 MobiDBLite consensus disorder prediction 278 310 - -
Clacu05g1644 1116 MobiDBLite consensus disorder prediction 831 852 - -
Clacu05g1644 1116 MobiDBLite consensus disorder prediction 441 563 - -
Clacu05g1644 1116 MobiDBLite consensus disorder prediction 987 1094 - -
Clacu05g1644 1116 PANTHER FORMIN-RELATED 280 1113 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Clacu05g1644 1116 SUPERFAMILY Formin homology 2 domain (FH2 domain) 519 994 - -
Clacu05g1644 1116 MobiDBLite consensus disorder prediction 407 575 - -
Clacu05g1644 1116 SMART it6_source 570 990 IPR015425 -
Clacu05g1644 1116 Pfam Formin Homology 2 Domain 576 975 IPR015425 -
Clacu05g1644 1116 MobiDBLite consensus disorder prediction 1002 1080 - -
Clacu05g1644 1116 ProSiteProfiles Formin homology-2 (FH2) domain profile. 570 1002 IPR015425 -
Clacu05g1644 1116 MobiDBLite consensus disorder prediction 407 436 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1644 Clacu-Chr5:24451291 Clacu11g0239 Clacu-Chr11:2148295 1.30E-97 dispersed
Clacu03g1743 Clacu-Chr3:31205771 Clacu05g1644 Clacu-Chr5:24451291 6.60E-100 transposed
Clacu05g2694 Clacu-Chr5:34513705 Clacu05g1644 Clacu-Chr5:24451291 2.00E-82 transposed
Clacu07g0232 Clacu-Chr7:2756530 Clacu05g1644 Clacu-Chr5:24451291 5.70E-98 transposed
Clacu08g1041 Clacu-Chr8:20438740 Clacu05g1644 Clacu-Chr5:24451291 2.90E-71 transposed
Clacu02g0858 Clacu-Chr2:10289006 Clacu05g1644 Clacu-Chr5:24451291 1.40E-153 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1644 K28090 - csv:101213072 923.309