Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1646 ATGCCAACAGTTTGGTTTTCTCTGAAAAAGTCCTTCCCTTGCAAGCCAGAGCCATCAGAAGTCTATGATCCAAAGTGCAGGAAACAACTCAACACAATCACAACTAAGAAAGCATCCAGAAAGTCAGGTTGTTCTTCTGGAAGGTCTGGTTGTTCAAGGTCCATAGCAAATCTCAAAGATGTCATCCATGGAAGCAAGAGGCACATGGAAAAACCACCGATTTGCAGCCCGAGGTCGATCGGTAGCAGCGAGTTCCTCAACCCAATTGCTCATGAAGTCATACTGAGCAACTCAAAGTGTGAGCTCAAGATTACTGGTTTTGGAAGCTTCCACCAAGAGGGTGTAGGAAATGCTGGCTCTGGAGGGGGAGCAGGTGGGAACTCGCCATTTTCCGGTACACTAAGACCCGGAACTCCTGGTCCAGGGGAGCACTTTGTTAACAACTCCAGTTCTCCTTTTAGTACTACCTCCATATCTGCTGCAAGAAAGCTTCCTTCTCTTAGAGATGGGCCTGCGGCTGGGAGTACTGCTAAATCTAAGGTGGGTGGGGAAATTCATACAAGCAAAAGGTTCTCCCCGCTAACCGAACTAAATGGTAATGCATTTTCGACGGTTACTTGCCATAAATGTGGAGAGCAGTTTTGCAAATTGGAGGCTGCTGAGTCTCACCATCTCTCTAAGCATGCTGTTACCGAGCTTGTGGAAGGTGATTCATCGAGGAAAATTGTCGAAATAATATGTCGAACGAACTTGTTGAAATCAGAGAACAATGGCAACCGTATCGAACGAGTCTTCAAAGTTCACAATATGCAAAAAACGTTAGCTGGATTTGAAGAATACCGGGAAATGGTGAAGATCAAGGCAAGCAAGCTTTCGAAGAAACACCCTCGATGCCTTGCGGATGGGAACGAGCTGCTGAGGTTTTACGGGACTACTTTAGGCTGCTCTCTTGGACTAAATGGCTCCTCCAGCCTCTGCATATCACAGAAATGCAATGTCTGCAGAATTATAAGGAATGGTTTCTCAGCAAAGAAGGATATGAAAGAAGAAGTAGGAGTTTTCACGACTTCGACGAGCGGAAAAGCTTTCGAAACCATTGAAACGACAGAAGAAAGCTCAGTAAAGAAAGCATTGCTAATCTGCAGAGTGATTGCAGGGAGGGTTCATAGGCCTTTGGAGAATATACAAGATATGGTTGGCCAAACAGGGTTTGATTCTCTAGCTGGCAAAGTGGGATTACATTCCAACATTGAAGAGCTTTATTTGCTCAGTCCTAGAGCTTTGCTTCCTTGTTTTATTGTAATTTGCAAGCCATGA 1317 45.03 MPTVWFSLKKSFPCKPEPSEVYDPKCRKQLNTITTKKASRKSGCSSGRSGCSRSIANLKDVIHGSKRHMEKPPICSPRSIGSSEFLNPIAHEVILSNSKCELKITGFGSFHQEGVGNAGSGGGAGGNSPFSGTLRPGTPGPGEHFVNNSSSPFSTTSISAARKLPSLRDGPAAGSTAKSKVGGEIHTSKRFSPLTELNGNAFSTVTCHKCGEQFCKLEAAESHHLSKHAVTELVEGDSSRKIVEIICRTNLLKSENNGNRIERVFKVHNMQKTLAGFEEYREMVKIKASKLSKKHPRCLADGNELLRFYGTTLGCSLGLNGSSSLCISQKCNVCRIIRNGFSAKKDMKEEVGVFTTSTSGKAFETIETTEESSVKKALLICRVIAGRVHRPLENIQDMVGQTGFDSLAGKVGLHSNIEELYLLSPRALLPCFIVICKP 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24515990 24517608 + ClG42_05g0164600.10 Clacu05g1646 249393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1646 438 Gene3D - 235 437 - -
Clacu05g1646 438 MobiDBLite consensus disorder prediction 143 162 - -
Clacu05g1646 438 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 437 - -
Clacu05g1646 438 FunFam C2H2-like zinc finger protein 229 437 - -
Clacu05g1646 438 ProSitePatterns Zinc finger C2H2 type domain signature. 207 228 IPR013087 -
Clacu05g1646 438 MobiDBLite consensus disorder prediction 118 184 - -
Clacu05g1646 438 SUPERFAMILY ADP-ribosylation 230 437 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1646 Clacu-Chr5:24515990 Clacu05g1998 Clacu-Chr5:29011872 2.90E-48 dispersed
Clacu01g2313 Clacu-Chr1:34002522 Clacu05g1646 Clacu-Chr5:24515990 6.10E-65 transposed
Clacu10g0612 Clacu-Chr10:8293674 Clacu05g1646 Clacu-Chr5:24515990 1.20E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1646 - - - 0.0