Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1649 ATGCTTGACATCAAACCCAGGGAGACTTTGGCTATAAACTTGCCATTGCAACTTCATCATACCCCAAACGAAAGCGTCAACATGAACAATCCACGTGACAATCTGCTGAGAATGGTGAAGTCATTATCCCTAAAGGTAGTAACTTTGGAAGAGCAAGAATTAAATACCAACACAACCCCTTTCTTCAATAGGTTTGTGGAAACTTTAGATTACTACTTGGAAATCTTTGAGTTCATTGATGTCACTCTACCAAGGAACAATAAGAACCGCATCAATGTCGAACAACATTGTTTGGAAAAAGATATCATTAATGTCATCGCTTGCGAGGGGAGCGAATAA 339 39.23 MLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKVVTLEEQELNTNTTPFFNRFVETLDYYLEIFEFIDVTLPRNNKNRINVEQHCLEKDIINVIACEGSE 112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24584293 24584631 - ClG42_05g0164900.10 Clacu05g1649 249396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1649 112 Pfam GRAS domain family 1 112 IPR005202 -
Clacu05g1649 112 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 112 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Clacu05g1649 112 Coils Coil 32 52 - -
Clacu05g1649 112 ProSiteProfiles GRAS family profile. 1 112 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1649 Clacu-Chr5:24584293 Clacu10g0438 Clacu-Chr10:5453557 7.90E-35 dispersed
Clacu05g1649 Clacu-Chr5:24584293 Clacu01g2009 Clacu-Chr1:32012370 2.90E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47707 PF03514 GRAS 3.80E-36 CL0063 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1649 K27748 - csv:101216606 184.882