Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1668 ATGCTCAAAAAGACAAAAATGGCAAATGCTTCCCTAACTCTGTTTCTGTCTCTGTCTCTGTTTCTCTTCTCTTCACCGTCTGTGGCTGTTGATTTCATAATTTCCTCACAAAACCTCACCCATGGCGCCACTCTTATCTCCGCAAAAGAATTTTTTGAACTGGGTTTCTTCAGCCCAAGAAATTCCACCAACCGTTACTTGGGCATTTGGTACAAAATCATCCCAGTTCGTACAATCGTTTGGGTCGCCAACAGAGAAAACCCCATCACTAATTCTTCCGCTGCTGTCGTTCTCAAAATCAACACCACCACCAGCGATCTCCTCCTTTTTGAGAACGACGCCGTTGTTTGGGTTGGAAAATCGTTGAAACCAGTAAAAACCCCCAAACTACACCTCTTAGACAATGGAAATCTGGTGTTGAAAGACGCTGAATCAGAGAAAATTTCATGGCAAAGCTTCGATTACCCAACGGATACATTACTTCCCGGAATGAAACTCGGATGGGACTTCGAAAATAGAATCCAACGCCGATTATCCGCTTGGAAATCCTCCGATGACCCATCTCCAGGGAGTTTAACGATGGAAATGATGAACACAAACTACCCAGAACCAGCGATGTGGAATGGGTCGAAAGAGTTCATGAGAAGCGGACCATGGAACGGCCTTCAATTCAGCGCAAAACCCACATCGGCTTTACCCATTTTAGTGTACAGCTATGTAAACAACAAATCCGAGCTTACTTACAGCTACGAGCTCATAAACTCTTCGTTAATCGGAAGAATGGTGTTGAATCAAACGCTATTCAGAAGAGAAGCTTGGTTATGGTCTGCATCGGAGAATATTTGGAAGCTGTATGCGACTATGCCGAGGGATTACTGCGATACTTACGGACTTTGTGGTGCGTTTGGGAGCTGTGACATTGAGCAAGTGCCTGCTTGTCAATGTCTAAGAGGGTTTCATCCTAAAGTACAAGAGAAATGGAATTTGATGGATTATACTGAAGGGTGTGTGAGGAATAAGGCTTTGAATTGTTCTGATAAAACTGGGTTTGCAAAGCTTCCGGGGTTGAAATTGCCTGATACAAAGCAGTCTTGGGTTAATGAAAGTATGAGTTTGAATGAATGTAGAGATAAGTGTTTGAGGAATTGTTCTTGTGTGGCGTTTGCTAATACTGATATTAGAGGACCAGGGAGTGGTTGTGCTATTTGGTTTGGGGATCTTGTTGATATCAAAGTTGTTCGAAAAGGAGGCCAGGATTTGTATGTTAGAATGTTGGCTTCTGAATTGGAGACAAAGAAGACGAGTTCGGTTGTCATCGGCGTTATCGTCGGAGCGGCGATTCTGGCGATTGCTGGTCTGGCTTTGATTGGGTTTTACCTTATTAGAAGCAGGAGGAGAAGTCTCGAAGGTGTAGGCAAGGATCTGGAAGGGCAAGAAGAAGATTTGGAGCTCCCAATAGTCGACTTAACGACAATATCTAATGCCACAGACAATTTTTCGAACTCCAACAAGCTTGGAGAAGGTGGTTTTGGTGCAGTCTTTCGGGGTAGACTTGGAGATGGACAAGAAATTGCAGTTAAGAGACTTTCTAGCTATTCAAGACAAGGGACTGATGAATTCAAGAATGAAGTGATACTCATTGCCAAACTTCAACATAGAAATCTTGTAAAACTTTTGGGTTGTTGCATACAAGGAGAGGAAAAGATGTTGATTTATGAGTACATGCCTAATAAGAGTTTGGACTCCTTCATTTTTGATCCTGCTAGAAAGAAGCTTTTGGATTGGTCGAAAAGATTCAATATCATATGCGGAATAGCTCGAGGGATTCTTTACCTTCATCAAGATTCGAGATTGAGGATTATACATAGAGATTTAAAAGCAAGCAATGTCTTGCTTGATATTGACATGAATCCAAAAATCTCGGATTTTGGAATGGCTAGAACGTTTGGAGGGGACCAAACCGAAGGAAATACTAGGAGAGTGGTCGGAACATATGGGTATATGGCACCAGAGTACGCCATTGATGGGCAATTTTCCATCAAGTCAGACGTCTTCAGTTTTGGAATATTATTGTTGGAAATCATAAGTGGAGAGAAGAATAGAGGGTTTTTTCGTCCTAACCATGCTCTGAACCTGATTGGACATGCATGGAAGTTATGGAATGAAGGGAAGCCATTAGAGTTGATTGATGCAACCATTGGAGAATCTTATGCTCTATCTGAAGTGTTGAGATGCATTCATGTTAGCCTCTTGTGCTTGCAACAACTTCCCGAGGATAGACCAACCATGTCAAATGTAGTTCTAATGCTAAGTAGTGAGAGCTCATTGCCACAACCAAAACAACCAGGATTTTACATGGAAAGAGATTCTCTGGAAGCATTTTCTCTTGATGGCAAGAATGAATCTTCTACTACCAATGAATTAACTATTACCCTCTTGGAGGCTAGATAA 2451 42.06 MLKKTKMANASLTLFLSLSLFLFSSPSVAVDFIISSQNLTHGATLISAKEFFELGFFSPRNSTNRYLGIWYKIIPVRTIVWVANRENPITNSSAAVVLKINTTTSDLLLFENDAVVWVGKSLKPVKTPKLHLLDNGNLVLKDAESEKISWQSFDYPTDTLLPGMKLGWDFENRIQRRLSAWKSSDDPSPGSLTMEMMNTNYPEPAMWNGSKEFMRSGPWNGLQFSAKPTSALPILVYSYVNNKSELTYSYELINSSLIGRMVLNQTLFRREAWLWSASENIWKLYATMPRDYCDTYGLCGAFGSCDIEQVPACQCLRGFHPKVQEKWNLMDYTEGCVRNKALNCSDKTGFAKLPGLKLPDTKQSWVNESMSLNECRDKCLRNCSCVAFANTDIRGPGSGCAIWFGDLVDIKVVRKGGQDLYVRMLASELETKKTSSVVIGVIVGAAILAIAGLALIGFYLIRSRRRSLEGVGKDLEGQEEDLELPIVDLTTISNATDNFSNSNKLGEGGFGAVFRGRLGDGQEIAVKRLSSYSRQGTDEFKNEVILIAKLQHRNLVKLLGCCIQGEEKMLIYEYMPNKSLDSFIFDPARKKLLDWSKRFNIICGIARGILYLHQDSRLRIIHRDLKASNVLLDIDMNPKISDFGMARTFGGDQTEGNTRRVVGTYGYMAPEYAIDGQFSIKSDVFSFGILLLEIISGEKNRGFFRPNHALNLIGHAWKLWNEGKPLELIDATIGESYALSEVLRCIHVSLLCLQQLPEDRPTMSNVVLMLSSESSLPQPKQPGFYMERDSLEAFSLDGKNESSTTNELTITLLEAR 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25126069 25130265 - ClG42_05g0166800.10 Clacu05g1668 249415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1668 816 Pfam Protein tyrosine and serine/threonine kinase 502 767 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g1668 816 Pfam PAN-like domain 344 410 IPR003609 -
Clacu05g1668 816 CDD PAN_AP_plant 342 423 - -
Clacu05g1668 816 Gene3D - 27 153 IPR036426 -
Clacu05g1668 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g1668 816 Gene3D Transferase(Phosphotransferase) domain 1 575 781 - -
Clacu05g1668 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 575 778 - -
Clacu05g1668 816 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 187 IPR036426 -
Clacu05g1668 816 ProSitePatterns Protein kinases ATP-binding region signature. 505 527 IPR017441 GO:0005524(InterPro)
Clacu05g1668 816 SMART ntp_6 345 424 IPR003609 -
Clacu05g1668 816 SMART blect_4 36 156 IPR001480 -
Clacu05g1668 816 ProSiteProfiles Bulb-type lectin domain profile. 30 153 IPR001480 -
Clacu05g1668 816 Pfam Domain of unknown function (DUF3403) 771 816 IPR021820 GO:0004674(InterPro)
Clacu05g1668 816 SMART serkin_6 499 770 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1668 816 Pfam D-mannose binding lectin 78 182 IPR001480 -
Clacu05g1668 816 SUPERFAMILY Protein kinase-like (PK-like) 484 770 IPR011009 -
Clacu05g1668 816 ProSiteProfiles Protein kinase domain profile. 499 776 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1668 816 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 30 784 - -
Clacu05g1668 816 Gene3D Phosphorylase Kinase; domain 1 470 574 - -
Clacu05g1668 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 343 424 - -
Clacu05g1668 816 Gene3D Hepatocyte Growth Factor 340 425 - -
Clacu05g1668 816 Pfam S-locus glycoprotein domain 215 322 IPR000858 GO:0048544(InterPro)
Clacu05g1668 816 CDD STKc_IRAK 505 770 - -
Clacu05g1668 816 PIRSF SRK 3 816 IPR024171 GO:0004674(InterPro)
Clacu05g1668 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 464 574 - -
Clacu05g1668 816 CDD B_lectin 39 156 IPR001480 -
Clacu05g1668 816 ProSiteProfiles PAN/Apple domain profile. 344 425 IPR003609 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0151 Clacu-Chr2:1523965 Clacu05g1668 Clacu-Chr5:25126069 8.70E-139 dispersed
Clacu03g0506 Clacu-Chr3:5318772 Clacu05g1668 Clacu-Chr5:25126069 6.10E-103 dispersed
Clacu03g0507 Clacu-Chr3:5327185 Clacu05g1668 Clacu-Chr5:25126069 5.80E-93 dispersed
Clacu03g0535 Clacu-Chr3:5565782 Clacu05g1668 Clacu-Chr5:25126069 3.00E-213 dispersed
Clacu03g0536 Clacu-Chr3:5573850 Clacu05g1668 Clacu-Chr5:25126069 7.60E-196 dispersed
Clacu03g0540 Clacu-Chr3:5606252 Clacu05g1668 Clacu-Chr5:25126069 5.80E-188 dispersed
Clacu04g1168 Clacu-Chr4:25865441 Clacu05g1668 Clacu-Chr5:25126069 2.40E-94 dispersed
Clacu05g1668 Clacu-Chr5:25126069 Clacu10g0613 Clacu-Chr10:8300398 9.40E-271 dispersed
Clacu05g1668 Clacu-Chr5:25126069 Clacu05g1672 Clacu-Chr5:25311196 1.40E-27 proximal
Clacu09g0256 Clacu-Chr9:2359086 Clacu05g1668 Clacu-Chr5:25126069 3.20E-38 transposed
Clacu09g0257 Clacu-Chr9:2360026 Clacu05g1668 Clacu-Chr5:25126069 2.30E-67 transposed
Clacu03g0531 Clacu-Chr3:5525118 Clacu05g1668 Clacu-Chr5:25126069 4.40E-186 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73574 PF07714 PK_Tyr_Ser-Thr 4.00E-48 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1668 - - - 0.0