Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1675 ATGGCGGACTACGGCGGCCACAATCTGGAAGTGGATCCAAGAAGCGGCTTCTGCAAATCCACAAAAATCTTCCACAGCAAACGCCGCCCAATCCCACTTCCCCCTAACCAATCCCTCGATGCGACGACCTTTATCTCTTCCCGCCCTCACAACGGCAAAATCGCCCTCATCGACGCCACCACCGGCCAACAAATCACCTATTCCCACCTCTGGAACTCCGTCGACGCCGTAGCCTCTTCCCTTTCCGACATGGGCATCCGAAAAGGCCACGTCATCCTCCTCCTTTCCCCTAACTCCATTTACTTTCCCATTATTTGCCTCGCCGTCATGTCCATCGGCGCCGTCATCACCACCACAAATCCCCTCAACACCCCTCAAGAAATCGCCAAACAAATCGCCGATTCCAAACCCATTTTAGCCTTCACTACCCAACAACTAATCCCCAAAATCGCCGCTTCCAAATTGCCAATCGTCATAATCGACGGTCAAGTTCCAAAATCCCCAGTCAAAATCGTGTCGACATTGAGCGAAATGATGAGGGAAAAACCAAGTGAGAGTCGAATTAAGGAACGCGTGGAGCAAAACGACACAGCGACTCTGCTTTATTCATCTGGAACGACAGGGGCGAGCAAAGGCGTAGTGTCGTCTCACAAGAATTTAATTGCAATGGTTCAAGTGGTTGTGACGAGGTTCAAATTAAGCGAAGGGGAAGGGACTTTTATTTGTACGGTCCCAATGTTTCATATTTACGGCCTTGTGGCTTTCGCTACGGGGTTGCTCTCTTCGGGATCTACAATCGTTGTATTATCGAAATTTGAGATTCATGAAATGTTGTCGGCGATTGACAAGTACAAGGCCACGTATCTGCCTCTTGTGCCGCCGATTCTGGTGGCGCTCGTGAACGCCGCCGACCAGATAAAGGGCAAGTACGATTTGGGGTCGTTGCACACGGCGTTGTCCGGCGGAGCGCCGCTTGGGAAGGAGGTGATTGAGGGTTTTGTTGAGAAATATCCGAATGTCGCAATTCTTCAGGGTTATGGATTGACGGAATCCACCGGAATTGGGGCGTCCACCGATTCGCTGGAGGAGAGCCGCCGATACGGCACGGCGGGGCTTCTGTCGCCGAGCACTGAGGGCATGATTGTTGACCCGGAAACCGGCGAGGCTCTTCCCGTGAACCGGACCGGAGAACTTTGGCTTAGAGGGCCCACCGTAATGAAAGGGTACTTTGGTAACACGGAGGCCACAACCTCAACACTTGATTCAGAGGGATGGTTGAGAACCGGTGATCTGTGTTATATTGATGAAGATGGTTTTATTTTTGTAGTTGATAGGCTGAAGGAACTAATCAAATATAAGGGATACCAGGTGCCTCCTGCTGAATTAGAGGCGTTGTTGCTTACTCATCCTAATATCTCCGATGCAGCTGTGATTCCATATCCAGACAAAGAGGTTGGACAGTATCCGATGGCTTATGTGGTAAGGAAGGGTGGAAGCGACATTTCACATGAAGATGTAATGCAATTTGTGGCAAAACAGGTGGCGCCGTACAAAAGAATCCGGCGGGTGGCGTTCGTGGGTTCCATTCCCAAGAATCCGTCCGGCAAGATTCTTAGAAAGGATCTCATAAAGCTCGCAACCTCCAAACTGTGA 1653 50.57 MADYGGHNLEVDPRSGFCKSTKIFHSKRRPIPLPPNQSLDATTFISSRPHNGKIALIDATTGQQITYSHLWNSVDAVASSLSDMGIRKGHVILLLSPNSIYFPIICLAVMSIGAVITTTNPLNTPQEIAKQIADSKPILAFTTQQLIPKIAASKLPIVIIDGQVPKSPVKIVSTLSEMMREKPSESRIKERVEQNDTATLLYSSGTTGASKGVVSSHKNLIAMVQVVVTRFKLSEGEGTFICTVPMFHIYGLVAFATGLLSSGSTIVVLSKFEIHEMLSAIDKYKATYLPLVPPILVALVNAADQIKGKYDLGSLHTALSGGAPLGKEVIEGFVEKYPNVAILQGYGLTESTGIGASTDSLEESRRYGTAGLLSPSTEGMIVDPETGEALPVNRTGELWLRGPTVMKGYFGNTEATTSTLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPNISDAAVIPYPDKEVGQYPMAYVVRKGGSDISHEDVMQFVAKQVAPYKRIRRVAFVGSIPKNPSGKILRKDLIKLATSKL 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25327764 25333227 + ClG42_05g0167500.10 Clacu05g1675 249422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1675 550 FunFam Long-chain-fatty-acid--CoA ligase FadD 25 447 - -
Clacu05g1675 550 Pfam AMP-binding enzyme 50 410 IPR000873 -
Clacu05g1675 550 Pfam AMP-binding enzyme C-terminal domain 461 536 IPR025110 -
Clacu05g1675 550 ProSitePatterns Putative AMP-binding domain signature. 200 211 IPR020845 -
Clacu05g1675 550 FunFam 4-coumarate--CoA ligase 2 448 549 - -
Clacu05g1675 550 CDD 4CL 33 542 - -
Clacu05g1675 550 Gene3D - 21 447 IPR042099 -
Clacu05g1675 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 17 542 - GO:0005777(PANTHER)|GO:0016405(PANTHER)
Clacu05g1675 550 SUPERFAMILY Acetyl-CoA synthetase-like 44 548 - -
Clacu05g1675 550 Gene3D - 448 549 IPR045851 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0357 Clacu-Chr3:4031959 Clacu05g1675 Clacu-Chr5:25327764 1.70E-127 dispersed
Clacu03g0358 Clacu-Chr3:4042059 Clacu05g1675 Clacu-Chr5:25327764 1.10E-134 dispersed
Clacu05g1675 Clacu-Chr5:25327764 Clacu05g2330 Clacu-Chr5:31659431 3.30E-126 dispersed
Clacu05g1675 Clacu-Chr5:25327764 Clacu06g1429 Clacu-Chr6:25156681 1.30E-98 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1675 K10526 - csv:101221396 1012.29