Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1687 ATGTCACCGCCGGCCAGGACCAAAAGCTGGAACGGCGGCCTCGATAAACACTACCCTCCACCGCTCACCACCCACGATGAAGTTATTTCCGACCCCATTGTTTTTTGGGACACGTTGAGGCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGACTTGCATGTTTTATATTCAGAAGTCACAAGAAGAGGAGGACATGAAAAGGTTGTTGCAGAGAAGAAATGGAGAGAAGTTGGAAGTGTGTTTAAGTTTTCTCCTACAACAACGAGTGCTTCATTTGTATTGAGAAAACATTATCTAAGTCTTCTTTACCATTACGAGCAAGTTTACTTGTTCGGCCGGCAGGGCCCCATCTGTGTCCCTCAAGCGCCATTTTCTTTCGGTAGCCCTACCAGTGAAAACGAATTGGCTCTTGTGGAATATACCCCCAAAACTACGTCGTTTTCGCCTGGTCCGCCTGCTGAAGTTACTGGAACAATTGATGGGAAATTCGACTGTGGTTACCTGGTGACTGTGAAATTGGGATCTGAGGTTCTAAGAGGAGTTCTTTACCATCCAGAGCAGCCACCTCCCTCGGATCTCCGGCCTCAGTCTACCAATGCCATTGTACCGTATACCGGCGGCAGACATCGATATTCTGGTAGGCGGCACCGGAGGAGCCGGAGAAAGGGAGATCCGAACCACCCAAAACCAAACAGAAGTGGGTATAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCAAACAGAGAAAGGGAGTTCACTAAGATGATTGGAGAGTCTTGGAACAATCTTAGCCCTGAAGAAAGGATGGTTTATCAAAACATTGGGTTGAAAGACAAGGAAAGATACAAGCGAGAGTTGAAAGAGTATAAGGAGAAAATGAGGCAGGCAACCGATGTTGATGGAGCTAACTATTCAAAACATGGGGACTAG 975 46.15 MSPPARTKSWNGGLDKHYPPPLTTHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFSFGSPTSENELALVEYTPKTTSFSPGPPAEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPEQPPPSDLRPQSTNAIVPYTGGRHRYSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEKMRQATDVDGANYSKHGD 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25496009 25497612 + ClG42_05g0168700.10 Clacu05g1687 249434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1687 324 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677(InterPro)
Clacu05g1687 324 MobiDBLite consensus disorder prediction 196 244 - -
Clacu05g1687 324 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677(InterPro)
Clacu05g1687 324 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 238 305 IPR009071 -
Clacu05g1687 324 Coils Coil 294 314 - -
Clacu05g1687 324 Pfam HMG (high mobility group) box 238 305 IPR009071 -
Clacu05g1687 324 Gene3D High mobility group box domain 222 318 IPR036910 -
Clacu05g1687 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 16 316 - -
Clacu05g1687 324 SMART bright_3 30 121 IPR001606 GO:0003677(InterPro)
Clacu05g1687 324 CDD HMG-box_AtHMGB9-like 238 304 - -
Clacu05g1687 324 SMART ARID_2 26 116 - -
Clacu05g1687 324 SUPERFAMILY ARID-like 25 128 IPR036431 GO:0003677(InterPro)
Clacu05g1687 324 Gene3D - 25 126 IPR036431 GO:0003677(InterPro)
Clacu05g1687 324 SMART hmgende2 237 306 IPR009071 -
Clacu05g1687 324 MobiDBLite consensus disorder prediction 219 235 - -
Clacu05g1687 324 SUPERFAMILY HMG-box 235 309 IPR036910 -
Clacu05g1687 324 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1687 Clacu-Chr5:25496009 Clacu06g0808 Clacu-Chr6:9752638 5.00E-74 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47711 PF01388 ARID 3.00E-18 CL0123 Clacu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1687 - - - 0.0