Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1691 ATGGCTATGGATGATACCGAGAGCTGTAGTAGTAGACCGGCGGATGATTTTTCGGCTCAGACTTGGAGACAGAAGCAGAAGGTTGGTGTTTACGACGAAGTTCTTCGTCGACTCAGGCTGTCGCACGAAGCGGAGACCTGCCTTCCTGGTTTCGAGGATGAACTTTGGACTCATTTTCATCGACTTCCTTCTAGGTATGCTATGGACGTCAACGTAGAGAGGGCTGAAGATGTTCTCATGCACAAAAATCTTCTCTACATGGCACATGATCCTGCTACTCGACCAGCTATTGATGTCCGTCTCGTACAGGTTCATTCATCTCCTGGCAGAAACTTTGGCAAGTCCGTTCATTCAAACTTGAAGGAAAAAGTAAACCAGCGGTTTTCTGGTTATGACAGCAATCAGAGACATCACCCCCCACCAGCATTTGGTTCAACAACAGAGGTCGAATATAGTTTTGACACCAACCAATTACATGATATAGACCAACCTGGCATTTTCTCCTGGCCAATGCATGAAATTACAATATCAACAATTGACAAGCCAAAACTGCTCAGTCAGTTGACGTCCTTACTTTCTGAGATTGGGCTGAATATTCAAGAAGCGCATGCTTTTTCAACAACAGATGGCTTTTCCTTGGATGTTTTTGTAGTTGATGGTTGGGCAATTGAGGATACCAAGCAGCTAAAAGATATACTCGCAGACGAAATATCAAAGATTCAGAAAAGGCATCCTCTATTTACACCTTGCATCTTCCGTACTGGGAAGCAAGACAAAATTGGAATCCAGTTCATCACAAAGTATGTCAACATTCCAAGGGACGAAGTTGATGAATGGGAAATTGATGCAACCCTGCTAGTCTTTGAGAAGAAAATTGCGTCTGGATCTCTTAGTGACTTGTATAAAGGCACCTTCTATGGTCAAGATGTGGCTATTAAGGTTCTAAAAGATGACAACTTGAACGAGACTGTACGGCGGGAATTTGCTCAAGAAATTCATATCATGAGAAAACTTCGGCATAAGAATGTTGTCCAATTTATTGGTGCATCTACCAGGCCTCCACACTTTTTCATTGTTACAGAATACATGTCTGGTGGAAGCATACACGACTTTTTACATCAACAAAAGGGTGTTCTTAGTTTTCCTTCCTTACTAAGAGTGGCAGTTGACGTGTCCAAGGGAATGAACTATTTGCATCAAAAGAATATCATTCATAGAGATCTGAAAGCTGCAAATCTTTTGATGGATGAAGATGGGGTTGTCAAGGTAGCTGATTTTGGTGTTGCTAGAGTGCAAGCTCAATCTGGTGTGATGACTGCAGAAACTGGAACATATCGTTGGATGGCTCCAGAGGTTATTGAGCACAGACCATATGATCGTAAAGCTGATGTTTATAGCTTTGGGATAGTGTTGTGGGAGCTGCTTACAGGACAGCTGCCTTATGAGAACTTGACTCCGTTACAAGCAGCAATTGGCGTGGTCCAGAAGGGTCTGAGGCCTAAGATTCCGAGGTATGCTCATCCAATGATCGTGGATTTGCTCAAGAAATGCTGGCTGCAGGATCCATCTTTGAGACCCGAATTCTCAGAAATTACGAGACTTCTACAGCAGACATTGCTGAAGGAGGCACTTCACGTTCCTGGAACAGATTATATAATAAGAAACTTGGGAGTGACAGGTACCATCTGGAAGATGATAAAAAAATTTGGGCTGGAGAGGACGTTCTATGGAGGAGCAAGGATACGGTATCTAACTACTTTCTAA 1764 43.03 MAMDDTESCSSRPADDFSAQTWRQKQKVGVYDEVLRRLRLSHEAETCLPGFEDELWTHFHRLPSRYAMDVNVERAEDVLMHKNLLYMAHDPATRPAIDVRLVQVHSSPGRNFGKSVHSNLKEKVNQRFSGYDSNQRHHPPPAFGSTTEVEYSFDTNQLHDIDQPGIFSWPMHEITISTIDKPKLLSQLTSLLSEIGLNIQEAHAFSTTDGFSLDVFVVDGWAIEDTKQLKDILADEISKIQKRHPLFTPCIFRTGKQDKIGIQFITKYVNIPRDEVDEWEIDATLLVFEKKIASGSLSDLYKGTFYGQDVAIKVLKDDNLNETVRREFAQEIHIMRKLRHKNVVQFIGASTRPPHFFIVTEYMSGGSIHDFLHQQKGVLSFPSLLRVAVDVSKGMNYLHQKNIIHRDLKAANLLMDEDGVVKVADFGVARVQAQSGVMTAETGTYRWMAPEVIEHRPYDRKADVYSFGIVLWELLTGQLPYENLTPLQAAIGVVQKGLRPKIPRYAHPMIVDLLKKCWLQDPSLRPEFSEITRLLQQTLLKEALHVPGTDYIIRNLGVTGTIWKMIKKFGLERTFYGGARIRYLTTF 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25574193 25580466 - ClG42_05g0169100.10 Clacu05g1691 249438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1691 587 Coils Coil 223 243 - -
Clacu05g1691 587 SUPERFAMILY ACT-like 171 238 IPR045865 -
Clacu05g1691 587 FunFam Serine/threonine-protein kinase isoform 1 276 364 - -
Clacu05g1691 587 CDD STKc_MAP3K-like 292 535 - -
Clacu05g1691 587 SUPERFAMILY Protein kinase-like (PK-like) 267 534 IPR011009 -
Clacu05g1691 587 ProSiteProfiles Protein kinase domain profile. 286 540 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1691 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g1691 587 Gene3D - 171 244 - -
Clacu05g1691 587 Gene3D Transferase(Phosphotransferase) domain 1 365 547 - -
Clacu05g1691 587 SMART serkin_6 286 540 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1691 587 Gene3D Phosphorylase Kinase; domain 1 273 364 - -
Clacu05g1691 587 PANTHER SERINE-THREONINE PROTEIN KINASE 157 539 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Clacu05g1691 587 PRINTS Tyrosine kinase catalytic domain signature 397 415 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g1691 587 PRINTS Tyrosine kinase catalytic domain signature 462 484 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g1691 587 PRINTS Tyrosine kinase catalytic domain signature 506 528 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g1691 587 PRINTS Tyrosine kinase catalytic domain signature 443 453 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g1691 587 PRINTS Tyrosine kinase catalytic domain signature 360 373 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g1691 587 Pfam Protein tyrosine and serine/threonine kinase 287 534 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g1691 587 ProSiteProfiles ACT domain profile. 173 249 IPR002912 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0733 Clacu-Chr3:8172960 Clacu05g1691 Clacu-Chr5:25574193 7.20E-42 dispersed
Clacu05g0135 Clacu-Chr5:1323492 Clacu05g1691 Clacu-Chr5:25574193 1.30E-26 dispersed
Clacu05g0550 Clacu-Chr5:4618249 Clacu05g1691 Clacu-Chr5:25574193 2.60E-19 dispersed
Clacu05g1691 Clacu-Chr5:25574193 Clacu10g0039 Clacu-Chr10:798985 4.70E-179 dispersed
Clacu05g1691 Clacu-Chr5:25574193 Clacu01g2229 Clacu-Chr1:33489435 4.10E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73576 PF07714 PK_Tyr_Ser-Thr 9.50E-72 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1691 - - - 0.0