Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1705 ATGAGGATCTGGATGTCAATGGCACAGTTCAAGAAGCAAGGACAAAAACCACAATCACTACCAAGACTACGATCAAGCAGCCACACCCCGTCTATGGATCGGTACCACAGAGTTGAGAAGCCAAGGGCTGAGACTCCAATTGACGAGAATGAAATTCGGATTACAAGCCAAGGACGGATGCGAAACTATATCACATATGCCATGACCCTACTTCAGGAAAAAGGTTCTAATGAAATTGTTTTCAAAGCAATGGGGAGGGCTATAAACAAGACTGTGACTATTGTGGAATTAATCAAGAGGCGAATTGTAGGTCTTCATCAGAATACCTCAATTGGCTCCACAGACATCACTGATACATGGGAGCCCTTGGAGGAAGGCCTTCTTCCATTGGAAACAACAAGGCATGTCTCGATGATTGTGATAACCCTTTCAAAGAAGGAATTAAATAAATCCTCTGTGGGGTATCAGCCTCCACTTCCTGCGGAGCTGGTGAAAACATTTGTAGAGTATGACTACGAGGGAGAAGGCTCACCTCACGATCAGGGTCCAGGACGAGGTAGAGGTCGGGGCCGCAATGGCAGAGGAAGGTCTAGGGGTAGAGGACCCCCAGGTAATGGCTTTGTAGCTAATGAATATGATGATGGAGATTGGGACCGTAATAGGGGTGGTAATGGAAGAGGGAGGGGTCGAGGGAGGGGTGGTGGTAATTTCCGTGGACGTGGAAGAGGAGGATACAATGGACCTCCATTTGATTTACAGCAAGATGGAGGATACAACCAAGACTTACCACCTCAAGGCCGTGGGCGTGGACGCGGAAGGGGCGGGTATCGCGGAAGGGGCCGTGGTTTCAGGACTAATGGAGGGCCGATCCAAGCAGCTGCATGA 885 49.15 MRIWMSMAQFKKQGQKPQSLPRLRSSSHTPSMDRYHRVEKPRAETPIDENEIRITSQGRMRNYITYAMTLLQEKGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTSIGSTDITDTWEPLEEGLLPLETTRHVSMIVITLSKKELNKSSVGYQPPLPAELVKTFVEYDYEGEGSPHDQGPGRGRGRGRNGRGRSRGRGPPGNGFVANEYDDGDWDRNRGGNGRGRGRGRGGGNFRGRGRGGYNGPPFDLQQDGGYNQDLPPQGRGRGRGRGGYRGRGRGFRTNGGPIQAAA 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25830655 25836406 + ClG42_05g0170500.10 Clacu05g1705 249452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1705 294 MobiDBLite consensus disorder prediction 29 44 - -
Clacu05g1705 294 FunFam DNA/RNA-binding protein Alba 1 46 148 - -
Clacu05g1705 294 Gene3D - 45 149 IPR036882 GO:0003676(InterPro)
Clacu05g1705 294 MobiDBLite consensus disorder prediction 173 294 - -
Clacu05g1705 294 MobiDBLite consensus disorder prediction 173 187 - -
Clacu05g1705 294 Pfam Alba 50 114 IPR002775 GO:0003676(InterPro)
Clacu05g1705 294 PANTHER RIBONUCLEASE P SUBUNIT P25 32 281 IPR051958 GO:0003723(PANTHER)
Clacu05g1705 294 MobiDBLite consensus disorder prediction 12 44 - -
Clacu05g1705 294 MobiDBLite consensus disorder prediction 12 28 - -
Clacu05g1705 294 SUPERFAMILY AlbA-like 47 160 IPR036882 GO:0003676(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1705 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1640 Clacu-Chr1:28528512 Clacu05g1705 Clacu-Chr5:25830655 2.40E-58 dispersed
Clacu05g1705 Clacu-Chr5:25830655 Clacu07g0170 Clacu-Chr7:2170062 3.40E-45 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g177 Blo01g01610 Blo12g00876 . Bda03g00296 . Bpe04g00256 Bma04g00257 Bma01g02384 . . Cma01g01987 Cma09g00089 Car01g01558 . . Cpe06g00052 . . . . . . . . Cla08g01406 Cam08g1886 Cec08g1463 Cco08g1596 Clacu08g1578 . Cre08g1361 . Cone7ag1910 . . Lsi04g01771 . Chy04g00397 . . . . . . . . . . Cmo01g02045 Cmo09g00087 . . . Car09g00077 . Cpe02g00058 . . . . . . . Cla05g01603 Cam05g1716 Cec05g1717 Cco05g1777 Clacu05g1705 Cmu05g1592 Cre05g1711 Lsi08g01303 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001144 2 5 1 4 2 2 4 2 2 2 2 2 3 2 2 3 2 5 3 2 2 2 2 2 2 1 2 8 2 3 78