Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu05g1707 | ATGGCTCAAACCACGCCCAATCACACTCAGACAGTCTCCGGTTGGGCAGCCCATGATTCTTCCGGCAAGATCAGTCCGTATACTTTCAAACGCAGAGAAAACGGCCCCGAGGACGTGACGATAGAGATTTTGTACTGTGGAATATGCCATACCGATATTCACTACGCCAAAAACGAGTGGGGCATCACCATGTATCCTGTAGTTCCCGGGCATGAGATGACAGGGGTAATCACGAAAGTGGGAAGCAACGTGGAGAAGTTCAAAATAGGGGACAGAGTGGGGGTTGGTTGTATAGCTGCTTCCTGTTTGAACTGCGAGTTTTGTCAAGATTCCCAAGAAAACTACTGTGAGAATTTGCAGTTTACATACAACGGAATCTTCTGGGATGGGAGCATAACTTACGGGGGATACTCCAAAATGTTTGTTTCAGATCAGAGGTACGTGGTGCACATACCTGAAAGCCTGCCAATGGACGCAACAGCGCCGTTGCTGTGTGCCGGAATAACAGTGTTCACGCCGATGAAAGATCTCGGCCTGATCGAGTCAGCGGGAAAGAAGGTGGGAGTGGTGGGGCTTGGAGGTCTGGGCCACATAGCAGTAAAATTTGCAAAGGCGTTTGGACACCATGTGACTGTGATCAGCACCTCTGCTTCAAAGGAACAAGAAGCTAAGGAGCGGCTTGGCGCTGACGATTTCATAGTCAGTAAAGATCCTGAGCAAATGCAGAGTTATAAGAGGACGTTGGATTTCATATTGGACACAGTGTCGGCGCAGCACTGTATTGGACCAATCTTAGAACTGCTAAAAGTGAATGGGACATTGTCCATTGTGGGAGCTCCAGACAAGCCCATTCAGTTGCCCTCTTTTCCTTTAATATTTGGGAAGAGGACAGTGAAGGGAAGCATAATAGGTGGAATACAAGAGACACAAGAGATGATGGATTTGTGTGGGAAATACAAAATTACAAGTGATATTGAAGTGATTAAGCCAGAAGATATCAACCATGCTATGGACCGTCTTCTCAAAAGCGATGTTCGATATCGATTTGTCATTGACATTGCCCAAAACATAATCCAATAA | 1080 | 46.48 | MAQTTPNHTQTVSGWAAHDSSGKISPYTFKRRENGPEDVTIEILYCGICHTDIHYAKNEWGITMYPVVPGHEMTGVITKVGSNVEKFKIGDRVGVGCIAASCLNCEFCQDSQENYCENLQFTYNGIFWDGSITYGGYSKMFVSDQRYVVHIPESLPMDATAPLLCAGITVFTPMKDLGLIESAGKKVGVVGLGGLGHIAVKFAKAFGHHVTVISTSASKEQEAKERLGADDFIVSKDPEQMQSYKRTLDFILDTVSAQHCIGPILELLKVNGTLSIVGAPDKPIQLPSFPLIFGKRTVKGSIIGGIQETQEMMDLCGKYKITSDIEVIKPEDINHAMDRLLKSDVRYRFVIDIAQNIIQ | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 25869105 | 25871600 | - | ClG42_05g0170700.10 | Clacu05g1707 | 249454 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu05g1707 | 359 | Gene3D | - | 166 | 323 | - | - | |
| Clacu05g1707 | 359 | FunFam | probable cinnamyl alcohol dehydrogenase | 15 | 175 | - | - | |
| Clacu05g1707 | 359 | ProSitePatterns | Zinc-containing alcohol dehydrogenases signature. | 70 | 84 | IPR002328 | GO:0008270(InterPro)|GO:0016491(InterPro) | |
| Clacu05g1707 | 359 | Gene3D | - | 15 | 353 | - | - | |
| Clacu05g1707 | 359 | SMART | PKS_ER_names_mod | 22 | 351 | IPR020843 | GO:0016491(InterPro) | |
| Clacu05g1707 | 359 | Pfam | Zinc-binding dehydrogenase | 194 | 316 | IPR013149 | - | |
| Clacu05g1707 | 359 | PANTHER | ALDEHYDE REDUCTASE | 7 | 355 | IPR047109 | GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER) | |
| Clacu05g1707 | 359 | Pfam | Alcohol dehydrogenase GroES-like domain | 35 | 153 | IPR013154 | - | |
| Clacu05g1707 | 359 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 155 | 321 | IPR036291 | - | |
| Clacu05g1707 | 359 | FunFam | Cinnamyl alcohol dehydrogenase | 166 | 323 | - | - | |
| Clacu05g1707 | 359 | SUPERFAMILY | GroES-like | 17 | 180 | IPR011032 | - | |
| Clacu05g1707 | 359 | CDD | CAD1 | 14 | 352 | IPR047109 | GO:0016616(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu02g0080 | Clacu-Chr2:822500 | Clacu05g1707 | Clacu-Chr5:25869105 | 2.10E-118 | dispersed | |
| Clacu02g0081 | Clacu-Chr2:834967 | Clacu05g1707 | Clacu-Chr5:25869105 | 1.30E-120 | dispersed | |
| Clacu02g0676 | Clacu-Chr2:6824667 | Clacu05g1707 | Clacu-Chr5:25869105 | 4.30E-95 | dispersed | |
| Clacu05g1707 | Clacu-Chr5:25869105 | Clacu05g1190 | Clacu-Chr5:10977744 | 1.30E-99 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu05g1707 | K00083 | - | csv:101213170 | 670.233 |