Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu05g1722 | ATGGATGTGAACGCCAATAAACCTTTGCAATTTTTTCGAAGAAGTTCGTCTCAGAAGGAAACTGAAAATGGAGGTCAAGTTATGGTTGAGATTAGCAGCGTTGAAAATGGCTACTCTGTACCGAAGCAAAACAGAGTCGATTCGCAAGAGCCGACCGATTCAAGCATTGGCTATGGCTCCGATTCACCACTCGCTCCCACTGCGAATAAGCCACCGAAAATCCCTAGTTCAAATGGAACCCTCACGCCCAGAAAATCTCTCAGAAGATCAATCCTCTCGAAACCCAAATCCAGATTTGGGGACCAGCCTGGTTATATCGATTCAGACATGTTTGAGGAGAATCATTTGTCGTTGAGAGATCAAATCGGTGCAACTTCATCCAGAAGCTCTACTCTCAACACGCCGAAGGCTCAACCTGAGGAAGAAGATGATGAGGAAATCTTCAAGATAGAGCAGTTGAATAATAAGCATAAGAAAGTGAAGGTGAAGACAGTGATTAAGTGGGTTGGAGTTTTTTGCATAATTGGTTGCTTGGTGGCTAGCTTGACTGTTAACCCTTTGAAGAATCGCTTCCTTTGGGGTTTAAGGGTTTGGAAATGGTGTTTACTTGCTACTGTGATTTTGTGTGGAATGATATTTACTCATTGGGTTATGAATGTGATTGTATTTTTGATCGAGAGGAACTTTTTGCTTAAGAAAAAAGTACTTTATTTTGTTCATGGGTTGAAGAAGAGTGTTCAAGTGACCCTTTGGTTGACATTGGTTCTTGTTACATGGGGGTCCTTGTTCGATCGGAGAAACCATACAATTCCGAGTTCGAGGATCACTACAAAGATTTTGGATGCTGTTACATGGACTCTGGTTAGCCTTCTTATAGGAGCATTCTTGTGGTTGGTAAAAACACTGTTGCTGAAAATACTGGCCTCTAAGTTCCATATGAACCGATTTTTCGACAGAATTCAGGAATCCATTTTCCATCATCATGTTCTACAAACTCTCTCAAGGCCTCCATTAATGGAGGGAGCTGAAATTACTCCCAAGTCCAGCAGTGGTAGACTGAGTTTGAAGAGTAAAAAATCAGACCGTAAAAAGGTGATTGACATGGGAAAGATTCACCAGCTGAAGCGAGAGAAGGTTTCAGCTTGGACAATGAAGGTATTGGTTGATGCAGTTACTAGTTCAGAGATGTCGATCTCACAAATACTTGATGAAAGCTACCAAGATGTTGCTGATGGCGAGATCACAGATGAGATGGAAGTTGCCAGAGCCGCTGCTTACAAGATATTCAACAATGTTGCTCTTCATGGAAACAAGTTCATAGAGGAAGAGGATCTTCTGAGATTCATGATCAAAGAAGAAGTTGATCTTGTGTTACCACACTTTGAGGTAGATGAGACAAGGAAAATTGACAGGAAAGCTCTAACAAATTGGGTGGTGAAGGTTTATCAAGGGAGAAAAACTCTAGCACATGCCTTGAAAGACACTAAAACAGCTGTGAGGCAATTGAATAATTTAGTAACGGCGCTTCTTATAATAGTAACCGCTGTTATTTGGCTTCTGTTGATGGAAATTGCTACTACCAAAGTACTTGTCTTCCTTCTAACTCAACTTGCAGTGGCAGCTTTCATGTTTGGAAACTCTTGCAAGACTGCATTTGAAGCTCTAATCTTTGTGTTTGTTATGCATCCATTTGATGTTGGTGACCGTTGTGTTGTCGATGGCGTCCAGCTGTTGGTTGAAGAAATGAACATCTTGACAACAGTCTTCTTGAAACTCAACAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCAACCAAGCCCATCACTAACTACTACAGAAGTCCAGACATGGGCGACACTGTTGAATTCTCAATCGGTTTCGCAACGCCATTGGAGAGGATTGGGCTCTTGAAAGAGAAAATAAAGAGGTATTTGGAGAAGAATCCACAACATTGGCATCCAAATCATAGTGTGGTGGTGCAGGAGATCGAAAGCGTGAATAAGATAAAGATCGCTCTTTATACGAACCACACCATGAATTTTCAAGACTGGACTGAGAAGAACCGACGAAGAACCGAGCTCGTGATGGAGTTGAAGAGAATTTTTGAAGAACTGAAGATCAACTACAATCTTCTGCCTCAAACAGTACATCTCTTCCCAGTTGGGGGGCACTGA | 2178 | 41.74 | MDVNANKPLQFFRRSSSQKETENGGQVMVEISSVENGYSVPKQNRVDSQEPTDSSIGYGSDSPLAPTANKPPKIPSSNGTLTPRKSLRRSILSKPKSRFGDQPGYIDSDMFEENHLSLRDQIGATSSRSSTLNTPKAQPEEEDDEEIFKIEQLNNKHKKVKVKTVIKWVGVFCIIGCLVASLTVNPLKNRFLWGLRVWKWCLLATVILCGMIFTHWVMNVIVFLIERNFLLKKKVLYFVHGLKKSVQVTLWLTLVLVTWGSLFDRRNHTIPSSRITTKILDAVTWTLVSLLIGAFLWLVKTLLLKILASKFHMNRFFDRIQESIFHHHVLQTLSRPPLMEGAEITPKSSSGRLSLKSKKSDRKKVIDMGKIHQLKREKVSAWTMKVLVDAVTSSEMSISQILDESYQDVADGEITDEMEVARAAAYKIFNNVALHGNKFIEEEDLLRFMIKEEVDLVLPHFEVDETRKIDRKALTNWVVKVYQGRKTLAHALKDTKTAVRQLNNLVTALLIIVTAVIWLLLMEIATTKVLVFLLTQLAVAAFMFGNSCKTAFEALIFVFVMHPFDVGDRCVVDGVQLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPITNYYRSPDMGDTVEFSIGFATPLERIGLLKEKIKRYLEKNPQHWHPNHSVVVQEIESVNKIKIALYTNHTMNFQDWTEKNRRRTELVMELKRIFEELKINYNLLPQTVHLFPVGGH | 725 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 26088516 | 26091331 | + | ClG42_05g0172200.10 | Clacu05g1722 | 249469 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu05g1722 | 725 | SUPERFAMILY | Sm-like ribonucleoproteins | 552 | 612 | IPR010920 | - | |
| Clacu05g1722 | 725 | MobiDBLite | consensus disorder prediction | 71 | 87 | - | - | |
| Clacu05g1722 | 725 | MobiDBLite | consensus disorder prediction | 9 | 62 | - | - | |
| Clacu05g1722 | 725 | Gene3D | - | 563 | 612 | IPR023408 | - | |
| Clacu05g1722 | 725 | MobiDBLite | consensus disorder prediction | 124 | 144 | - | - | |
| Clacu05g1722 | 725 | PIRSF | Memb_At2g17000 | 5 | 722 | IPR016688 | - | |
| Clacu05g1722 | 725 | FunFam | Predicted mechanosensitive ion channel | 563 | 612 | - | - | |
| Clacu05g1722 | 725 | MobiDBLite | consensus disorder prediction | 1 | 105 | - | - | |
| Clacu05g1722 | 725 | Pfam | Mechanosensitive ion channel, beta-domain | 556 | 613 | IPR006685 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu05g1722 | 725 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 5 | 43 | 719 | IPR016688 | GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu02g1153 | Clacu-Chr2:22856160 | Clacu05g1722 | Clacu-Chr5:26088516 | 4.10E-137 | dispersed | |
| Clacu03g1565 | Clacu-Chr3:29248196 | Clacu05g1722 | Clacu-Chr5:26088516 | 9.70E-185 | dispersed | |
| Clacu05g1722 | Clacu-Chr5:26088516 | Clacu06g0859 | Clacu-Chr6:10780667 | 3.00E-143 | dispersed | |
| Clacu05g1720 | Clacu-Chr5:26053961 | Clacu05g1722 | Clacu-Chr5:26088516 | 4.30E-296 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu05g1722 | K22048 | - | csv:101217197 | 1154.04 |