Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1722 ATGGATGTGAACGCCAATAAACCTTTGCAATTTTTTCGAAGAAGTTCGTCTCAGAAGGAAACTGAAAATGGAGGTCAAGTTATGGTTGAGATTAGCAGCGTTGAAAATGGCTACTCTGTACCGAAGCAAAACAGAGTCGATTCGCAAGAGCCGACCGATTCAAGCATTGGCTATGGCTCCGATTCACCACTCGCTCCCACTGCGAATAAGCCACCGAAAATCCCTAGTTCAAATGGAACCCTCACGCCCAGAAAATCTCTCAGAAGATCAATCCTCTCGAAACCCAAATCCAGATTTGGGGACCAGCCTGGTTATATCGATTCAGACATGTTTGAGGAGAATCATTTGTCGTTGAGAGATCAAATCGGTGCAACTTCATCCAGAAGCTCTACTCTCAACACGCCGAAGGCTCAACCTGAGGAAGAAGATGATGAGGAAATCTTCAAGATAGAGCAGTTGAATAATAAGCATAAGAAAGTGAAGGTGAAGACAGTGATTAAGTGGGTTGGAGTTTTTTGCATAATTGGTTGCTTGGTGGCTAGCTTGACTGTTAACCCTTTGAAGAATCGCTTCCTTTGGGGTTTAAGGGTTTGGAAATGGTGTTTACTTGCTACTGTGATTTTGTGTGGAATGATATTTACTCATTGGGTTATGAATGTGATTGTATTTTTGATCGAGAGGAACTTTTTGCTTAAGAAAAAAGTACTTTATTTTGTTCATGGGTTGAAGAAGAGTGTTCAAGTGACCCTTTGGTTGACATTGGTTCTTGTTACATGGGGGTCCTTGTTCGATCGGAGAAACCATACAATTCCGAGTTCGAGGATCACTACAAAGATTTTGGATGCTGTTACATGGACTCTGGTTAGCCTTCTTATAGGAGCATTCTTGTGGTTGGTAAAAACACTGTTGCTGAAAATACTGGCCTCTAAGTTCCATATGAACCGATTTTTCGACAGAATTCAGGAATCCATTTTCCATCATCATGTTCTACAAACTCTCTCAAGGCCTCCATTAATGGAGGGAGCTGAAATTACTCCCAAGTCCAGCAGTGGTAGACTGAGTTTGAAGAGTAAAAAATCAGACCGTAAAAAGGTGATTGACATGGGAAAGATTCACCAGCTGAAGCGAGAGAAGGTTTCAGCTTGGACAATGAAGGTATTGGTTGATGCAGTTACTAGTTCAGAGATGTCGATCTCACAAATACTTGATGAAAGCTACCAAGATGTTGCTGATGGCGAGATCACAGATGAGATGGAAGTTGCCAGAGCCGCTGCTTACAAGATATTCAACAATGTTGCTCTTCATGGAAACAAGTTCATAGAGGAAGAGGATCTTCTGAGATTCATGATCAAAGAAGAAGTTGATCTTGTGTTACCACACTTTGAGGTAGATGAGACAAGGAAAATTGACAGGAAAGCTCTAACAAATTGGGTGGTGAAGGTTTATCAAGGGAGAAAAACTCTAGCACATGCCTTGAAAGACACTAAAACAGCTGTGAGGCAATTGAATAATTTAGTAACGGCGCTTCTTATAATAGTAACCGCTGTTATTTGGCTTCTGTTGATGGAAATTGCTACTACCAAAGTACTTGTCTTCCTTCTAACTCAACTTGCAGTGGCAGCTTTCATGTTTGGAAACTCTTGCAAGACTGCATTTGAAGCTCTAATCTTTGTGTTTGTTATGCATCCATTTGATGTTGGTGACCGTTGTGTTGTCGATGGCGTCCAGCTGTTGGTTGAAGAAATGAACATCTTGACAACAGTCTTCTTGAAACTCAACAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCAACCAAGCCCATCACTAACTACTACAGAAGTCCAGACATGGGCGACACTGTTGAATTCTCAATCGGTTTCGCAACGCCATTGGAGAGGATTGGGCTCTTGAAAGAGAAAATAAAGAGGTATTTGGAGAAGAATCCACAACATTGGCATCCAAATCATAGTGTGGTGGTGCAGGAGATCGAAAGCGTGAATAAGATAAAGATCGCTCTTTATACGAACCACACCATGAATTTTCAAGACTGGACTGAGAAGAACCGACGAAGAACCGAGCTCGTGATGGAGTTGAAGAGAATTTTTGAAGAACTGAAGATCAACTACAATCTTCTGCCTCAAACAGTACATCTCTTCCCAGTTGGGGGGCACTGA 2178 41.74 MDVNANKPLQFFRRSSSQKETENGGQVMVEISSVENGYSVPKQNRVDSQEPTDSSIGYGSDSPLAPTANKPPKIPSSNGTLTPRKSLRRSILSKPKSRFGDQPGYIDSDMFEENHLSLRDQIGATSSRSSTLNTPKAQPEEEDDEEIFKIEQLNNKHKKVKVKTVIKWVGVFCIIGCLVASLTVNPLKNRFLWGLRVWKWCLLATVILCGMIFTHWVMNVIVFLIERNFLLKKKVLYFVHGLKKSVQVTLWLTLVLVTWGSLFDRRNHTIPSSRITTKILDAVTWTLVSLLIGAFLWLVKTLLLKILASKFHMNRFFDRIQESIFHHHVLQTLSRPPLMEGAEITPKSSSGRLSLKSKKSDRKKVIDMGKIHQLKREKVSAWTMKVLVDAVTSSEMSISQILDESYQDVADGEITDEMEVARAAAYKIFNNVALHGNKFIEEEDLLRFMIKEEVDLVLPHFEVDETRKIDRKALTNWVVKVYQGRKTLAHALKDTKTAVRQLNNLVTALLIIVTAVIWLLLMEIATTKVLVFLLTQLAVAAFMFGNSCKTAFEALIFVFVMHPFDVGDRCVVDGVQLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPITNYYRSPDMGDTVEFSIGFATPLERIGLLKEKIKRYLEKNPQHWHPNHSVVVQEIESVNKIKIALYTNHTMNFQDWTEKNRRRTELVMELKRIFEELKINYNLLPQTVHLFPVGGH 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26088516 26091331 + ClG42_05g0172200.10 Clacu05g1722 249469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1722 725 SUPERFAMILY Sm-like ribonucleoproteins 552 612 IPR010920 -
Clacu05g1722 725 MobiDBLite consensus disorder prediction 71 87 - -
Clacu05g1722 725 MobiDBLite consensus disorder prediction 9 62 - -
Clacu05g1722 725 Gene3D - 563 612 IPR023408 -
Clacu05g1722 725 MobiDBLite consensus disorder prediction 124 144 - -
Clacu05g1722 725 PIRSF Memb_At2g17000 5 722 IPR016688 -
Clacu05g1722 725 FunFam Predicted mechanosensitive ion channel 563 612 - -
Clacu05g1722 725 MobiDBLite consensus disorder prediction 1 105 - -
Clacu05g1722 725 Pfam Mechanosensitive ion channel, beta-domain 556 613 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu05g1722 725 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 43 719 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1722 K22048 - - csv:101217197 1154.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1153 Clacu-Chr2:22856160 Clacu05g1722 Clacu-Chr5:26088516 4.10E-137 dispersed
Clacu03g1565 Clacu-Chr3:29248196 Clacu05g1722 Clacu-Chr5:26088516 9.70E-185 dispersed
Clacu05g1722 Clacu-Chr5:26088516 Clacu06g0859 Clacu-Chr6:10780667 3.00E-143 dispersed
Clacu05g1720 Clacu-Chr5:26053961 Clacu05g1722 Clacu-Chr5:26088516 4.30E-296 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g0164 . 208 601 Mechanosensitive Ion Channel Family AT4G00290 66.5 6.4e-153 537.7
Clacu08g1323 . 15 656 Mechanosensitive Ion Channel Family AT5G10490 58.5 1.3e-196 683.3
Clacu10g0760 . 166 784 Mechanosensitive Ion Channel Family AT5G10490 58.0 4.1e-187 651.7
Clacu08g1323 . 15 636 Mechanosensitive Ion Channel Family AT1G58200 58.0 2.8e-199 692.2
Clacu10g0760 . 166 561 Mechanosensitive Ion Channel Family AT1G58200 71.2 1.1e-163 573.9
Clacu02g1153 . 43 928 Mechanosensitive Ion Channel Family AT1G53470 54.8 3.1e-259 891.7
Clacu02g0409 . 91 952 Mechanosensitive Ion Channel Family AT1G53470 51.1 1.0e-238 823.5
Clacu02g1153 . 43 926 Mechanosensitive Ion Channel Family AT3G14810 53.3 1.1e-245 846.7
Clacu02g1153 . 47 928 Mechanosensitive Ion Channel Family AT1G78610 58.4 1.2e-279 959.5
Clacu02g0409 . 59 952 Mechanosensitive Ion Channel Family AT1G78610 55.9 4.9e-270 927.5
Clacu02g1153 . 226 928 Mechanosensitive Ion Channel Family AT2G17000 61.6 4.1e-237 818.1
Clacu02g0409 . 266 934 Mechanosensitive Ion Channel Family AT2G17000 58.7 1.1e-221 766.9
Clacu02g1153 . 1 675 Mechanosensitive Ion Channel Family AT2G17010 50.3 4.1e-163 572.0
Clacu05g1722 . 62 719 Mechanosensitive Ion Channel Family AT5G12080 58.2 2.9e-202 702.2
Clacu03g1565 . 58 750 Mechanosensitive Ion Channel Family AT5G12080 53.7 6.6e-199 691.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002739 1 4 1 1 1 2 2 2 2 3 2 2 1 3 3 1 2 3 1 2 3 1 0 2 2 2 1 6 1 0 57