Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1726 ATGACGATTTGGTGCTGCTTATGCTTCACCGTTGGAGAAGAAGACGAAAGGGAAAGGGAAGAGGAACTGAAGAAGGAAGGTGAAATGAAACCCATGATGCGTGAGGAGGTTTTTGAGAACCAGGATGACTCTGATCGCATTGTGCGAAATGGTGATGATTCTCAAGGGAGTAATCCACTTCCGATTGCTGTAGATGATGCGCCTGACCGTCATGACGGTGATCGACTTAGACTGTTTGAGGATATGGTCAGAGCAATGCACGATGGCGCCGATGGTGGTGGTGCTCATTGGGACGATGAGCTGCGCGGCGGCGGCGGCGGGGCTATTAATCCCTGGAATTTTTCTTTTGGAATTCTGCATCAATCTGAGGGAGGAGAAAGTAGTAGCGCCTCGGCTTTGTCCTTGTCTTCTACGGTGGAGACTTCTAATGAGGAACGCGATCGGGATGCCAACCATAAGCGCGCTAAAGTTCTCTCCAAATTCACTGAGAGCTCATTTGCAACTCCATGGCCTTTGGGTGCTGGAAATCCTATGAGAGATTATGATTTTATTCACGGATCATCTTCAATTATGAGTAGGAATGAATTTCTATACCATGCTTCTACATCATGCAGAGTTGACGAAGATTTGGAATCTAGTTTTGGTAGAGATGATGGGATCAATGATAATGACACCTGTAAATCAGAAGGATTTGAAGTAAGAATGGATCTTACAGATGATTTACTGCATATGGTGTTCTCTTTCTTGGATCACATCAATCTTTGTCGAGCTGCTATAGTCTGCAGGCAGTGGCAAGCTGCTAGTGCTCATGAAGATTTCTGGAGGTGTTTGAATTTTGAAAATAGGAACATATCCATGGAACAATTCGAGGATATGTGTGGAAGATATCCAAATGCTACAGAGGTCAATATCTCTGGTGTACCTGCCGTTCACTTGCTTGCCATGAAAGCAGTTTCTTCTTTAAGACATCTGGAGGTTTTAACTCTGGGGAGAGGACAACTGGCAGATAACTTTTTTCACGCCCTGACTGATTGCCATTTATTGAAGAGTTTGACTGTCAATGATTCTACGCTGGTTAATGTTACACAAGAGATACCTATAAGCCATGATAGACTGCGTCATCTTCATCTTACTAAATGTCGTGTTATACGCATATCTGTTAGATGTCCACAACTTGAAACATTGTCGTTGAAGCGCAGCAACATGGCACAGGCTGTTCTTAACTGCCCCCTTCTTCGGGACCTGGATATAGGCTCTTGCCACAAGCTCTCAGATGCTGCAATTCGCTCAGCCGCTATTTCATGCCCACAGTTGGAATCTCTTGATATGTCTAATTGTTCATGTGTTAGTGATGAGACATTACGTGAAATTTCTGCAAACTGCCCGAATCTCCAGCTTCTGAATGCATCATACTGCCCAAATATATCTTTGGAGTCTGTAAGACTGACAATGCTGACCGTGCTTAAGCTTCACAGCTGTGAGGGCATCACATCAGCTTCAATGACCGCAATATCTAGTAGTTCTGGTTTGAAGGTTTTGGAGCTTGATAATTGCAGTCTTTTGACTTCTGTTTCTCTGGATCTTCCCCATTTACAGAATATCAGACTTGTTCATTGCCGCAAATTCTCAGACTTGAGTTTACAGAGTGTTAAATTATCATCCATAATGGTCTCTAATTGTCCATCACTTCATCGGATCAACATCACTTCCAATTTACTTCAAAAATTGGTGTTGAAGAAACAAGAGAGCTTGGCCAAATTGGTTTTGCAGTGCCCTAGTCTGCAAGATGTGGACCTCACAGACTGTGAATCGCTAACGAATTCTATTTGTGAGGTTTTTAGTGATGGTGGTGGATGCCCTATGTTGAAATCACTTGTTCTTGATAACTGTGAGAGTCTGACTGCTGTTCGATTCTGTAGCAGTTCTTTAGGCAGTCTTTCCCTTGTTGGTTGCCGGGCAATCACTTCACTTGAACTTCAATGCCCTAATCTCGAACAGGTTTCTTTAGATGGCTGTGATCATCTTGAGAGAGCATCATTTTCCCCGGTTGGTCTGCGGTCACTAAACCTGGGAATCTGTCCCAAATTGAATGAATTAAAACTTGAGGCCCCTCGGATGGATTTACTTGAGTTAAAAGGTTGTGGTGGATTGTCTGAAGCAGCCATCAATTGTCCTCGTCTAACATCGTTGGATGCTTCCTTTTGTGGCCAACTGAAAGATGAGTGTTTGTCTGCGACTACTGCCTCATGTCCACAGATTGAGTCGTTAATACTGATGTCATGTCCATCGGTTGGTTCAGAGGGGCTTTACTCTCTGCGATGCCTTCTGAAGTTGGTTGTGCTCGATTTATCATATACCTTTTTGATGAGCTTGCAGCCAGTCTTCGAGTCTTGTATACAACTTAAGGTATTGAAACTACAAGCATGCAAGTATTTAACTGACTCATCGCTAGAGCCTCTTTATAAGGAAGACGCTCTTCCAGCTCTTCAAGAGTTAGACTTATCTTACGGGACTCTTTGTCAGTCTGCCATAGAAGAGCTTCTTGCTTGTTGCACTCACTTAACTCATGTGAGCTTAAATGGGTGTGTGAACATGCATGATCTAAATTGGGGTTGTAGCATTGGACAGCTTTCGTTGTCCAGCATCCCAATTCCTCTTGGTCAGGCCACTCTTGATGAGATTGAGGAACCAGTTGCACAGCCAAACCGTTTGTTACAGAACCTTAACTGTGTAGGTTGTCAGAATATTAGAAAGGTTCTCATTCCTCCAGCTGCTCGTTGTTTTCATTTATCATCATTAAACCTATCCTTGTCTTCAAATCTCAAGGAAGTTGACGTCTCTTGTTACAACCTATGCTTTCTTAATTTGAGTAATTGCTGCTCTTTGGAAGTTCTAAAACTTGACTGCCCGCGGTTAACCAGTCTCTTTCTTCAGTCTTGCAACATTGAAGAAGAAGTGGTTGTGGCTGCGGTATCGAGATGTAGCATGCTCGAGACGTTGGATGTCCGCTTATGTCCAAAGATCTCCTCTATTAGCATGGTACAACTGCGTATTGCTTGTCCAAGTTTGAAGCGGATCTTCAGCACTCTGTCTCCAACATGA 3102 43.46 MTIWCCLCFTVGEEDEREREEELKKEGEMKPMMREEVFENQDDSDRIVRNGDDSQGSNPLPIAVDDAPDRHDGDRLRLFEDMVRAMHDGADGGGAHWDDELRGGGGGAINPWNFSFGILHQSEGGESSSASALSLSSTVETSNEERDRDANHKRAKVLSKFTESSFATPWPLGAGNPMRDYDFIHGSSSIMSRNEFLYHASTSCRVDEDLESSFGRDDGINDNDTCKSEGFEVRMDLTDDLLHMVFSFLDHINLCRAAIVCRQWQAASAHEDFWRCLNFENRNISMEQFEDMCGRYPNATEVNISGVPAVHLLAMKAVSSLRHLEVLTLGRGQLADNFFHALTDCHLLKSLTVNDSTLVNVTQEIPISHDRLRHLHLTKCRVIRISVRCPQLETLSLKRSNMAQAVLNCPLLRDLDIGSCHKLSDAAIRSAAISCPQLESLDMSNCSCVSDETLREISANCPNLQLLNASYCPNISLESVRLTMLTVLKLHSCEGITSASMTAISSSSGLKVLELDNCSLLTSVSLDLPHLQNIRLVHCRKFSDLSLQSVKLSSIMVSNCPSLHRINITSNLLQKLVLKKQESLAKLVLQCPSLQDVDLTDCESLTNSICEVFSDGGGCPMLKSLVLDNCESLTAVRFCSSSLGSLSLVGCRAITSLELQCPNLEQVSLDGCDHLERASFSPVGLRSLNLGICPKLNELKLEAPRMDLLELKGCGGLSEAAINCPRLTSLDASFCGQLKDECLSATTASCPQIESLILMSCPSVGSEGLYSLRCLLKLVVLDLSYTFLMSLQPVFESCIQLKVLKLQACKYLTDSSLEPLYKEDALPALQELDLSYGTLCQSAIEELLACCTHLTHVSLNGCVNMHDLNWGCSIGQLSLSSIPIPLGQATLDEIEEPVAQPNRLLQNLNCVGCQNIRKVLIPPAARCFHLSSLNLSLSSNLKEVDVSCYNLCFLNLSNCCSLEVLKLDCPRLTSLFLQSCNIEEEVVVAAVSRCSMLETLDVRLCPKISSISMVQLRIACPSLKRIFSTLSPT 1033
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26158642 26165548 + ClG42_05g0172600.10 Clacu05g1726 249473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1726 1033 FunFam F-box/LRR-repeat protein 15 791 876 - -
Clacu05g1726 1033 CDD F-box_FBXO41 239 275 - -
Clacu05g1726 1033 SUPERFAMILY F-box domain 236 267 IPR036047 GO:0005515(InterPro)
Clacu05g1726 1033 PANTHER OS10G0396666 PROTEIN 222 1027 - -
Clacu05g1726 1033 SMART fbox_2 237 277 IPR001810 GO:0005515(InterPro)
Clacu05g1726 1033 SMART LRR_CC_2 969 993 IPR006553 -
Clacu05g1726 1033 SMART LRR_CC_2 619 657 IPR006553 -
Clacu05g1726 1033 SMART LRR_CC_2 750 775 IPR006553 -
Clacu05g1726 1033 SMART LRR_CC_2 798 823 IPR006553 -
Clacu05g1726 1033 SMART LRR_CC_2 409 434 IPR006553 -
Clacu05g1726 1033 SMART LRR_CC_2 528 553 IPR006553 -
Clacu05g1726 1033 SMART LRR_CC_2 482 507 IPR006553 -
Clacu05g1726 1033 SMART LRR_CC_2 661 691 IPR006553 -
Clacu05g1726 1033 SMART LRR_CC_2 994 1019 IPR006553 -
Clacu05g1726 1033 SMART LRR_CC_2 461 481 IPR006553 -
Clacu05g1726 1033 SMART LRR_CC_2 851 882 IPR006553 -
Clacu05g1726 1033 SMART LRR_CC_2 724 749 IPR006553 -
Clacu05g1726 1033 SMART LRR_CC_2 591 616 IPR006553 -
Clacu05g1726 1033 SMART LRR_CC_2 435 460 IPR006553 -
Clacu05g1726 1033 MobiDBLite consensus disorder prediction 15 71 - -
Clacu05g1726 1033 FunFam F-box/LRR-repeat protein 15 229 479 - -
Clacu05g1726 1033 Pfam F-box-like 239 279 IPR001810 GO:0005515(InterPro)
Clacu05g1726 1033 Gene3D Ribonuclease Inhibitor 519 873 IPR032675 -
Clacu05g1726 1033 MobiDBLite consensus disorder prediction 123 140 - -
Clacu05g1726 1033 MobiDBLite consensus disorder prediction 15 50 - -
Clacu05g1726 1033 SUPERFAMILY RNI-like 257 477 - -
Clacu05g1726 1033 MobiDBLite consensus disorder prediction 123 152 - -
Clacu05g1726 1033 Gene3D Ribonuclease Inhibitor 230 484 IPR032675 -
Clacu05g1726 1033 Gene3D Ribonuclease Inhibitor 874 1030 IPR032675 -
Clacu05g1726 1033 SUPERFAMILY RNI-like 585 816 - -
Clacu05g1726 1033 SUPERFAMILY RNI-like 788 1026 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1726 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g161 . . . . Bpe02g01559 . . . . . . . Car09g00313 . . . Cpe06g00258 . . . . . . . Cla05g01626 . . . Clacu05g1726 . Cre05g1739 . . . . Lsi04g01388 . . . Blo17g00273 Blo18g00056 Bda01g01346 Bda13g01586 Bpe14g00280 . Bma01g00911 Bma02g00548 Sed05g1794 Cmo01g01810 . . . Car01g01319 . . Cpe02g00290 Bhi09g03083 Tan01g3471 Cmetu07g1629 . Hepe01g1916 Mch11g0451 . . . . . . . . . . . Cme07g00176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004724 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 4 1 1 42