Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1730 ATGTCCGGGGTATGCGACATTAACGGCGTCCACTTCGCCGTCGAAGGTACTGTCAGGCTCTTGATGGGCCGTGGGCCCAGCTCTGCCAGATCCTCTGGCCATCCTTATCCAATGTTCCCATTTTACCCTCGCTCAATGCTGCAGCGAAATAACAGAATAGCGTCCTTGTCAGCAACACCCAAATGGGTTTCTTCCATTACCCATCTCTGCAACCAAAGAAAGCGACCCCTTGTTACTGAGAGCTTGCATTTGCAAATTTGCAACCAGAAACGAAGAGAGAGAGAAAAAGGAAATGGGTTTAAGGGTTGCTGTGTGATGTTGCAGGTTCTTGTTACTAACCAGCCATGGAAAGTGCAACAATGTAAGATGAAGTCTACGAAGAGGGCAGCAATGGCACTTCCTGTTGAGCTTGTTGTTTTGGCTTTTCTCTTCTGTGCTACCGTTGGTGTGGTGGACTCTGATGATGGAGCAACGTTGTTGGAGATAAAGAAATCATTCAGGGACGTGGATAATGTTCTTTATGATTGGACAAGCTCACCTTCATCAGACTACTGTATGTGGAGAGGTGTCACCTGTGACAATGCCACTCTCAATGTTATCTCTCTTAATCTTTCAGGTCTCAATTTGGATGGGGAAATTTCTCCTTCAGTCGGGAACCTCAAGGGCCTGCAAACTTTGGATTTGAGGGGGAATAGTCTTTCTGGGCAAATTCCAGATGAGATTGGGGATTGCTTTTCGTTAATAAATCTGGATTTGTCGTTTAATGAGATTTATGGAGACATACCATTTTCCATTTCGAAGTTGAAGCAACTGGAAATGCTTGTTCTGAAAAATAATCGACTGATTGGGCCGATCCCATCTACTTTATCTCAGATTCCAAACTTGAAGGTCTTGGATCTGGCACAGAATAATCTTAGTGGGGAAATACCAAGACTAATTTACTGGAATGAAGTGTTGCAATATCTTGGTTTGCGTGGCAACAATTTGGTGGGCACACTATCTCCAGATATGTGTCAGCTGACTGGTTTATGGTATTTCGATGTGAGAAACAACAGTTTAACTGGCGGCATACCCCAAACCATAGGCAACTGCACAGCCTTCCAGGTCTTGGACTTGTCATACAATCATCTCACTGGAGAGATACCATTTAACATTGGTTTCCTTCAAGTAGCCACGTTGTCCTTACAGGGTAATCAGCTATCAGGTCCCATTCCACCCGTAATTGGTCTGATGCAGGCGCTTGCTGTGCTAGATTTGAGTTGCAACATGTTAACTGGTCCAATCCCCTCTATCTTAGGGAATCTGACATATACCGAGAAGCTGTACTTGCATAGTAACAAGCTCACTGGGCCCATTCCAGCAGAGCTTGGGAATATGACGAAGCTCCATTATCTGGAACTGAATGATAATCATCTTACTGGGAATATTCCAGCTGAGCTTGGAAAACTCACCGATTTATTTGATCTAAATGTTGCTAATAACAATCTCGGAGGGCCTATCCCTGACAATCTTAGCTCTTGCACAAATCTCAACAGCCTAAATGTGCATGGCAACAAGTTGAATGGAACTATTCCCCCGTCTTTCCAGAGGCTAGAGAGTATGACTTACTTGAATCTCTCCACGAATGATCTACAAGGTCCTATTCCAGTTGAGCTGTCTCGTATTGGCAATTTGGATACGTTAGACATTTCAAATAACAAAATTAGTGGCACAATTTCTTCCTCCTTCGGTGATCTGGAACATCTGCTAAAGCTAAATTTAAGTAGGAATCATTTGACGGGATTTATTCCAGCTGAATTTGGCAATCTAAGGAGTGTAATGGAAATAGATATTTCACACAACCAGCTCTCTGGGTTCATTCCTCAAGAACTGAGTCAACTTCAAAATCTTCTCTCCTTGAGACTTGAAAACAACAATTTATCTGGGGACCTGACGTCGCTGATTAGCTGCCTAAGTCTTACTGAATTAAATGTATCTTATAACAATCTAGCTGGTGAGATTCCGACAAGCAACAACTTCTCTAGATTTTCATCTGACAGTTTCCTTGGAAATCTTGCCCTCTGTGGATATTGGAATAGCAACAACTATCCCTGCCATGAACCTCATACGACAGAGCGAGTGACCATATCTAAAGCTGCTATCCTGGGAATTGCTCTCGGTGCCCTTGTAATCCTTCTAATGATCCTTCTAACAGTGTGCCGTCCAAACAACACAATACCTTTTCCAGATGGATCACTTGACAAACCAGTTACGTACTCCACTCCCAAGCTAGTGATCCTTCACATGAACATGGCCCTTCACGTTTATGAGGATATTATGAGGATGACTGAAAATTTGAATGAAAAGTACATTATTGGACATGGAGCTTCAAGCACAGTCTACAAGTGTGTACTGAAGAATTGTAAACCTGTGGCTGTCAAAAAGCTCTTTTCCCACCAGCCCCATAGCATGAAGGGATTCGAGACCGAACTGGAAACCGTGGGTAGCATCAAGCACAGAAATCTAGTAAGCCTCCAAGGATACTCCTTATCCCCCTCTGGGAATCTCCTCTTCTATGACTACATGGAAAATGGCAGTCTTTGGGATCATCTACATGGGTCTAGCTCTACCAAGAAGAAAAAGCTTGACTGGGACACTCGGCTCAATATTGCCCATGGAGCAGCCCAGGGACTATCATATCTACACCATGATTGTAGCCCTCGCATTATCCACAGGGATGTTAAGTCATCTAACATTTTATTAGACAAGGATTTTGAAGCCCATCTCACTGATTTTGGTATTGCCAAGAGCTTATGCACCTCGAAGACATATACATCCACTTATATCATGGGAACCATTGGATACATAGATCCAGAGTATGCTCGGACTTCTCGACTTACTGAAAAGTCCGATGTTTACAGCTTTGGCATTGTGTTACTTGAATTGCTCACAGGAAGGAAAGCTGTGGACAATGAATCAAATCTCCACCAATTGATCTTATCAAAAACAGCCAACAATGCTGTAATGGAGACGGTTGATGCTGAAATAACTGCAACTTGCAAGGACCTTGGAGCTGTAAAGAAGGCATTTCAGCTGGCTCTCCTTTGCACCAAGAGGCAGCCATCCGACCGACCAACAATGCACGAAGTAACACGCGTCATTGCGAGTCTTCTGCCCTCCGCCACAACACTAAAGCAAACACCAACCATAACATCCATGCCCCCATCTGCAAAATCCCCTTGCTACAAGGATGAATATGCAAATCTAAAAACGCCGCACGTGCTGAACTGCCCAACCATGAGCACCTCAGATGCCCAGCTCTTCCTCAAGTTCGGAGAGGTAATATCACAAAACATGTACGGTTTGTCAATTTACTTTAACCAGGCAATGATTTCAGGGGTAATCAACTTGCCAATGGTTTGA 3402 43.74 MSGVCDINGVHFAVEGTVRLLMGRGPSSARSSGHPYPMFPFYPRSMLQRNNRIASLSATPKWVSSITHLCNQRKRPLVTESLHLQICNQKRREREKGNGFKGCCVMLQVLVTNQPWKVQQCKMKSTKRAAMALPVELVVLAFLFCATVGVVDSDDGATLLEIKKSFRDVDNVLYDWTSSPSSDYCMWRGVTCDNATLNVISLNLSGLNLDGEISPSVGNLKGLQTLDLRGNSLSGQIPDEIGDCFSLINLDLSFNEIYGDIPFSISKLKQLEMLVLKNNRLIGPIPSTLSQIPNLKVLDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGTLSPDMCQLTGLWYFDVRNNSLTGGIPQTIGNCTAFQVLDLSYNHLTGEIPFNIGFLQVATLSLQGNQLSGPIPPVIGLMQALAVLDLSCNMLTGPIPSILGNLTYTEKLYLHSNKLTGPIPAELGNMTKLHYLELNDNHLTGNIPAELGKLTDLFDLNVANNNLGGPIPDNLSSCTNLNSLNVHGNKLNGTIPPSFQRLESMTYLNLSTNDLQGPIPVELSRIGNLDTLDISNNKISGTISSSFGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMEIDISHNQLSGFIPQELSQLQNLLSLRLENNNLSGDLTSLISCLSLTELNVSYNNLAGEIPTSNNFSRFSSDSFLGNLALCGYWNSNNYPCHEPHTTERVTISKAAILGIALGALVILLMILLTVCRPNNTIPFPDGSLDKPVTYSTPKLVILHMNMALHVYEDIMRMTENLNEKYIIGHGASSTVYKCVLKNCKPVAVKKLFSHQPHSMKGFETELETVGSIKHRNLVSLQGYSLSPSGNLLFYDYMENGSLWDHLHGSSSTKKKKLDWDTRLNIAHGAAQGLSYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCTSKTYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNESNLHQLILSKTANNAVMETVDAEITATCKDLGAVKKAFQLALLCTKRQPSDRPTMHEVTRVIASLLPSATTLKQTPTITSMPPSAKSPCYKDEYANLKTPHVLNCPTMSTSDAQLFLKFGEVISQNMYGLSIYFNQAMISGVINLPMV 1133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26209422 26220387 + ClG42_05g0173000.10 Clacu05g1730 249477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1730 1133 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 317 426 - -
Clacu05g1730 1133 SMART serkin_6 779 1051 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1730 1133 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 750 854 - -
Clacu05g1730 1133 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 855 1058 - -
Clacu05g1730 1133 Pfam Leucine rich repeat N-terminal domain 153 193 IPR013210 -
Clacu05g1730 1133 Gene3D Ribonuclease Inhibitor 391 699 IPR032675 -
Clacu05g1730 1133 ProSiteProfiles Leucine-rich repeat profile. 294 316 IPR001611 GO:0005515(InterPro)
Clacu05g1730 1133 SUPERFAMILY Protein kinase-like (PK-like) 757 1045 IPR011009 -
Clacu05g1730 1133 Pfam Leucine rich repeat 557 616 IPR001611 GO:0005515(InterPro)
Clacu05g1730 1133 Pfam Leucine rich repeat 270 329 IPR001611 GO:0005515(InterPro)
Clacu05g1730 1133 Gene3D Phosphorylase Kinase; domain 1 761 854 - -
Clacu05g1730 1133 ProSitePatterns Serine/Threonine protein kinases active-site signature. 902 914 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g1730 1133 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 427 700 - -
Clacu05g1730 1133 SUPERFAMILY L domain-like 179 435 - -
Clacu05g1730 1133 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 152 316 - -
Clacu05g1730 1133 Gene3D Ribonuclease Inhibitor 316 390 IPR032675 -
Clacu05g1730 1133 ProSiteProfiles Protein kinase domain profile. 779 1051 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1730 1133 ProSitePatterns Protein kinases ATP-binding region signature. 785 808 IPR017441 GO:0005524(InterPro)
Clacu05g1730 1133 Pfam Protein kinase domain 781 1044 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g1730 1133 Pfam Leucine Rich Repeat 414 435 IPR001611 GO:0005515(InterPro)
Clacu05g1730 1133 Pfam Leucine Rich Repeat 509 531 IPR001611 GO:0005515(InterPro)
Clacu05g1730 1133 Pfam Leucine Rich Repeat 439 459 IPR001611 GO:0005515(InterPro)
Clacu05g1730 1133 Pfam Leucine Rich Repeat 368 387 IPR001611 GO:0005515(InterPro)
Clacu05g1730 1133 Pfam Leucine Rich Repeat 343 364 IPR001611 GO:0005515(InterPro)
Clacu05g1730 1133 Pfam Leucine Rich Repeat 652 670 IPR001611 GO:0005515(InterPro)
Clacu05g1730 1133 Pfam Leucine Rich Repeat 461 483 IPR001611 GO:0005515(InterPro)
Clacu05g1730 1133 Pfam Leucine Rich Repeat 223 244 IPR001611 GO:0005515(InterPro)
Clacu05g1730 1133 SMART LRR_typ_2 579 602 IPR003591 -
Clacu05g1730 1133 SMART LRR_typ_2 459 483 IPR003591 -
Clacu05g1730 1133 SMART LRR_typ_2 220 244 IPR003591 -
Clacu05g1730 1133 SMART LRR_typ_2 292 316 IPR003591 -
Clacu05g1730 1133 Gene3D Transferase(Phosphotransferase) domain 1 855 1063 - -
Clacu05g1730 1133 CDD STKc_IRAK 785 1047 - -
Clacu05g1730 1133 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 647 1048 IPR050647 GO:0001558(PANTHER)|GO:0010286(PANTHER)
Clacu05g1730 1133 SUPERFAMILY L domain-like 389 677 - -
Clacu05g1730 1133 Gene3D Ribonuclease Inhibitor 152 315 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1730 Clacu-Chr5:26209422 Clacu09g1390 Clacu-Chr9:18391198 2.10E-18 dispersed
Clacu05g1730 Clacu-Chr5:26209422 Clacu06g0774 Clacu-Chr6:9033389 2.40E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73579 PF00069 Pkinase 6.10E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1730 K20718 - csv:101214398 1862.04