Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1750 ATGGGATCGGAGGATTCAGTGAGATTAAGATTGGAGGAATTGCACAAAGACTTGGGGAAGAAACAGAGATTCGAGGAAGCAGTTTCCACCATTATTTCTCTGCTTCAAGATCGCTATCCTACTGCTTCTCCTTCATTACGCAAATCGTTCTATTCCGTAATTTGCCGAGTTGCAACAGTATTGAAGACGAGGTTTACGGCCCCAGGGTTTTGGCTTTCTGGTCTTAAGCTTTTTCAATTTTCTTTGACTTTGCTCTCTGATCATTCAGAGAGACAACACCTGGAGGCTTGCCTAGCTCAGGCCAAGGAAATTCTTCACCAAATCGATAATCCATCTCCTGCTTCACAAAGTAATTCATCAAATGGAGGCTATCTTTTTGAGGGCCATCTCACTGTTGATCCAGAGCCACCCCAGCCCCAGTGGCTGGTGCAGTCAAACCTCTTGACAGCCGCTGCAGCTGCGCTATCTAATGCTGAATCTTCTCAAGGTCCAGCTGAGAACAGCAACACTTCTGAAAATGCTACTAATATTCTTCAAGCGCTTATTGAAAATCTAGATAACGCTGTAGATGGGTTCATGGACTTGGAAATGGCTAGCGGACCGCCAAGAGTCCCTCCTGCAAGTAAAGAAGTCGTCGCAAAACTTCCTGTAATTATGATAACTGATGAAGTTCTTGCCAAGCTAGGAAGAGATGTACAATGTGCTATTTGCAGGGAAAACTTGGCTGTTGATGACAAGATGCAGGAATTGCCTTGCAAACACACATTCCACCCACCTTGTTTGAAGCCCTGGCTGGATGAGCATAACTCTTGTCCGATTTGTCGACATGAATTGCCCACCGACGACCACAAATACGAGAGCTGGAAGGAGCGAGAGAAAGAGGCCGAAGAAGAAAGAAAAGGAGCTGCAAATGCTGTTCGTGGTGGTGAATATATGTATATTTGA 945 45.19 MGSEDSVRLRLEELHKDLGKKQRFEEAVSTIISLLQDRYPTASPSLRKSFYSVICRVATVLKTRFTAPGFWLSGLKLFQFSLTLLSDHSERQHLEACLAQAKEILHQIDNPSPASQSNSSNGGYLFEGHLTVDPEPPQPQWLVQSNLLTAAAAALSNAESSQGPAENSNTSENATNILQALIENLDNAVDGFMDLEMASGPPRVPPASKEVVAKLPVIMITDEVLAKLGRDVQCAICRENLAVDDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELPTDDHKYESWKEREKEAEEERKGAANAVRGGEYMYI 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26475800 26477737 - ClG42_05g0175000.10 Clacu05g1750 249497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1750 314 Coils Coil 285 305 - -
Clacu05g1750 314 SUPERFAMILY RING/U-box 228 281 - -
Clacu05g1750 314 FunFam E3 ubiquitin-protein ligase RNF181 195 281 - -
Clacu05g1750 314 Pfam Ring finger domain 233 275 IPR001841 -
Clacu05g1750 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 119 280 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Clacu05g1750 314 CDD RING-H2_RNF126-like 233 275 - -
Clacu05g1750 314 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
Clacu05g1750 314 SMART ring_2 234 274 IPR001841 -
Clacu05g1750 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 281 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1750 Clacu-Chr5:26475800 Clacu10g2097 Clacu-Chr10:34280620 3.80E-18 dispersed
Clacu05g1750 Clacu-Chr5:26475800 Clacu09g0367 Clacu-Chr9:3179660 1.10E-12 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1750 K16274 - csv:101218065 434.106