Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1754 ATGGTCTGCGAGATGGAGACTGGTGTTATTGAAGATATGGACATCGAAGCGGTTCCTTCTATGTGGCCTGAGGATGTTGGACCAGATGTTAGAAAGCAGTTCAACGTAGAAAGGCCAGGAGCAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCGACGATTGTTGATTTCAAGCGTCTTATAGAGTTAACTAACTATACTGAGAAAGGATCTTCACAATTACAATATCTTGCAAAACAGTGGGAGTATAAGCAAGCAAATGCTGTGCGTCTCCTTAAAGAAGAACTTGACATTCTAAGCAAGCAGAGGAAAGAAGTTGAGCTCAAGAAATTAAAAATATTAGAAGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCAATTTCTATTTTGGAAGAATCTTGTGATCTATGGCAAGATATTCCAAGTAGGAAAACTGATTTCGTTGTTCAAAGTAAGAGAGTCGAAATTGATGCAGAGTATGATACTGTGACATACTGGAAGCAACGAGCCATGGATCTGGAAAAATTATTGGAAGCAAGTCTACAGCGAGAGCAGATGCTTGCAGAGAAGCTTAAGGAAAACATAAAAAATATTGAAAAGCAGTCCTCTCCAGTTGAGGAGTTGTCACAAATTCTTAAAAGAGCCGACAATTTTTTGCATTTTGTTCTGCAGAATGCACCAGTGGTTTTTGGTCATCAGGACAAAGAGTTGCGCTACCGATTTATCTACAATCATTTTCCAAGTTTGCAAGAAGAGGATATTATAGGAAGAACAGACGTTGAAATTTTCAGTGGTGCTGGTGTTAAGGAATCTCAAGATTTCAAGAAAGAAGTTCTGGAGAAAGGGTTACCTGCAAAGAGGGAGATTCAGTTTGATACCGAATTATTTGGGCTGAAGACCTTTTTGATTTATGTTGAACCTGTCTTTAGCAAGGCTGGAGAGACAATTGGAATAAATTATATGGGAATGGACATAACCGATCAGGTTAAAAAACGAGAAAAGATGGCAAAGCTTCGCGAGGAGATTGCAGTACAAAAAGCCAAGGAATCAGAGCTGAACAAAACAATTCATATCACGGAGGAAACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCACATGAAATTAGATCTCCACTGGCTGGAGTGGTTAGTATGGCTGAGATTCTGTCCACCACGAAACTTGATCGGGAGCAACAACATCTGTTAGATGTTATGCTGTCTTCAGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGACCTTTCTAAGGTTGAATCAGGAGTAATGAAGTTGGAAGCTACAAAATTCCGTCCAAGAGAGGTTGTAAAACATGTGCTACAGACTGCTGCCGCATCATTGCGAAAATTCTTGGTTCTGGAGGGACGTATAGCCGATGATGTTCCTATAGAGGTCATTGGAGATGTTCTTAGGATTCGGCAAATCCTCACCAACTTGATCAGCAACGCAATCAAGTTCACTCATCAAGGGAAGGTTGGAATTAACCTTTATGTGTTACCCTATCCACCCATTGGGACAGGAGAAGAATGCCATAAGAAATCAACAGCCGATAACTCAACAGTTTCGGTAAATGGTTTGCAAGAAGGAACATGTCTTCCAGCCCCTCAAAATGGCTTGTGTGGCCATAAACACGGTGATAGAAATCACTTGCATTGTGATGCACTAGGAACCCCAAGCAAGAGCGAAACCACAATGAATGGAAACAGAGAAAACAAGTCTTGTTCAGCTGAAACGACGGTATGGATACGCTGTGATGTATATGACACAGGAATTGGAATACCAGAAAATGCACTACCAACCCTTTTTAAGAGGTACATGCAAGCGAGTGCCGATCATGCTCGAAAGTATGGAGGGACTGGACTTGGGCTGGCAATATGCAAACAGCTGGTTGAATTGATGGGTGGCCATCTCACTGTTTCCAGCCGAGAAAACCATGGATCTACATTTACATTTGTGTTGCCATACAAGGTTTCAACCACCTGTAGTCCTTCCGACGATTCCGACGAGCTCTCGGATGACGAGTCTACAAATGATGAAATGACTGAGGGCTTTTTCCAATTCCAACCCCACAGTTTTAGTTCCCTATCATCTTCCAACGGATCCACAAGGATCCCAAACTCATTGATGCATACAACTGGGTATCCCACCTCAACCAAACTCAATGGATTTGCTGAAGGTGGTTCTTATCCTATTCCCTCAAACAACATCGCACCACAACAGACTGCTTCTCCTAGAGATGCCCGTTACACCAATGCCGCAGTAAACTCAAGCGAGTCACAATGTTTATCAAGTCAGATCAACTCAAATCTTGATAACCAAAACCAATCAGACACAAATGCTTGGTTGCAAAATGCCAGTGGCGTGAATTCTGTTTACAGATCAGAAACAACAAAGCAAGAAGATAGATTGGAAAAACAAAGTAATAAACTTCAAAAAACAGATCAGGGGAAAGAGAGATCCGATGCAAGTAATCACTGCAGAAATAGCAGTTGTGGTTCTGAAGTAACAGTGGCATTGGAGCCCAGAATTCTTCTTGTTGAGGATAATAAGACCAATATTATGGTGACTCAGTCCATGATGAAGAAGTTTGGCCAAAAAATCGATGTCGTAACTAACGGTATTGAAGCTGTTCGTGCAGTTCAACGACGTTCGTATGATCTCATTCTCATGGATGTATTCATGCCAGTTATGGATGGGCTTGAAGCTACAAGGTTAATTCGTTCTTTTGAGGAAACAGGCAGCTGGGAGGCAGCTGTAAATGCTGGAATAATCCAACCAACTACACCTTCTTGGACTCCCTCCTCCCGAAACAGGATGCCCATCATTGCTATGACGGCGAATTCAATGTCAGAAAGCGCAGATGAGTGTTATGAAAATGGTATGGACTCATTCGTATCAAAGCCAATCACGTTCCAGAAGTTGAAAGAATGTCTTGAACGATATTTACCACAACCTCCCTTGTAA 3009 41.61 MVCEMETGVIEDMDIEAVPSMWPEDVGPDVRKQFNVERPGADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLKEELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEESCDLWQDIPSRKTDFVVQSKRVEIDAEYDTVTYWKQRAMDLEKLLEASLQREQMLAEKLKENIKNIEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKELRYRFIYNHFPSLQEEDIIGRTDVEIFSGAGVKESQDFKKEVLEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLAGVVSMAEILSTTKLDREQQHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPIGTGEECHKKSTADNSTVSVNGLQEGTCLPAPQNGLCGHKHGDRNHLHCDALGTPSKSETTMNGNRENKSCSAETTVWIRCDVYDTGIGIPENALPTLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVSSRENHGSTFTFVLPYKVSTTCSPSDDSDELSDDESTNDEMTEGFFQFQPHSFSSLSSSNGSTRIPNSLMHTTGYPTSTKLNGFAEGGSYPIPSNNIAPQQTASPRDARYTNAAVNSSESQCLSSQINSNLDNQNQSDTNAWLQNASGVNSVYRSETTKQEDRLEKQSNKLQKTDQGKERSDASNHCRNSSCGSEVTVALEPRILLVEDNKTNIMVTQSMMKKFGQKIDVVTNGIEAVRAVQRRSYDLILMDVFMPVMDGLEATRLIRSFEETGSWEAAVNAGIIQPTTPSWTPSSRNRMPIIAMTANSMSESADECYENGMDSFVSKPITFQKLKECLERYLPQPPL 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26562297 26570481 + ClG42_05g0175400.10 Clacu05g1754 249501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1754 1002 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 594 670 IPR003594 -
Clacu05g1754 1002 FunFam Putative histidine kinase 5 359 436 - -
Clacu05g1754 1002 CDD HisKA 370 432 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Clacu05g1754 1002 SMART HKATPase_4 482 672 IPR003594 -
Clacu05g1754 1002 MobiDBLite consensus disorder prediction 807 846 - -
Clacu05g1754 1002 CDD REC_hyHK_CKI1_RcsC-like 858 993 - -
Clacu05g1754 1002 FunFam Histidine kinase 5 850 998 - -
Clacu05g1754 1002 Gene3D - 367 435 - -
Clacu05g1754 1002 Coils Coil 808 828 - -
Clacu05g1754 1002 MobiDBLite consensus disorder prediction 810 839 - -
Clacu05g1754 1002 Coils Coil 92 112 - -
Clacu05g1754 1002 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Clacu05g1754 1002 ProSiteProfiles Response regulatory domain profile. 857 997 IPR001789 GO:0000160(InterPro)
Clacu05g1754 1002 MobiDBLite consensus disorder prediction 745 771 - -
Clacu05g1754 1002 CDD HATPase_EvgS-ArcB-TorS-like 487 669 - -
Clacu05g1754 1002 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 670 IPR036890 -
Clacu05g1754 1002 Gene3D - 436 676 IPR036890 -
Clacu05g1754 1002 Pfam Response regulator receiver domain 858 925 IPR001789 GO:0000160(InterPro)
Clacu05g1754 1002 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Clacu05g1754 1002 SUPERFAMILY CheY-like 856 998 IPR011006 -
Clacu05g1754 1002 Coils Coil 181 208 - -
Clacu05g1754 1002 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Clacu05g1754 1002 MobiDBLite consensus disorder prediction 747 771 - -
Clacu05g1754 1002 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 40 998 - GO:0000155(PANTHER)|GO:0005887(PANTHER)|GO:0009927(PANTHER)|GO:0046777(PANTHER)
Clacu05g1754 1002 Coils Coil 342 362 - -
Clacu05g1754 1002 SMART REC_2 856 993 IPR001789 GO:0000160(InterPro)
Clacu05g1754 1002 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Clacu05g1754 1002 PRINTS Bacterial sensor protein C-terminal signature 632 650 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Clacu05g1754 1002 PRINTS Bacterial sensor protein C-terminal signature 656 669 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Clacu05g1754 1002 SMART HisKA_10 371 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Clacu05g1754 1002 Gene3D - 853 997 - -
Clacu05g1754 1002 Gene3D PAS domain 213 348 - -
Clacu05g1754 1002 FunFam Histidine kinase 5 213 348 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1754 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1754 Clacu-Chr5:26562297 Clacu11g0252 Clacu-Chr11:2280269 9.10E-50 dispersed
Clacu05g1754 Clacu-Chr5:26562297 Clacu02g0278 Clacu-Chr2:2520926 6.30E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g656 Blo01g01429 . Bda01g00649 . . Bpe02g00521 . Bma01g02184 . . Cma01g01683 . Car09g00334 . . . Cpe06g00274 . . . . . . . Cla05g01652 Cam05g1764 Cec05g1770 Cco05g1829 Clacu05g1754 Cmu05g1639 Cre05g1767 Cone4ag1716 Cone7ag1634 . . Lsi04g01364 . . . . . . . . . . . Sed05g1812 Cmo01g01734 Cmo09g00388 Cma09g00387 . Car01g01298 . . Cpe02g00308 Bhi09g03051 Tan01g3520 Cmetu07g0647 . . . . . . . . . . . . . . Cme07g00153
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu10g0060 . 5 1211 Histidine Kinase Gene Family AT2G17820 64.1 0.0e+00 1439.5
Clacu11g0252 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.6 0.0e+00 1344.7
Clacu01g0671 . 24 971 Histidine Kinase Gene Family AT2G01830 71.5 0.0e+00 1296.2
Clacu02g0278 . 290 1242 Histidine Kinase Gene Family AT2G01830 53.7 2.3e-277 952.2
Clacu06g0219 . 97 1023 Histidine Kinase Gene Family AT2G01830 53.7 5.7e-268 921.0
Clacu02g0966 . 304 1252 Histidine Kinase Gene Family AT2G01830 51.9 6.9e-266 914.1
Clacu05g1754 . 1 997 Histidine Kinase Gene Family AT5G10720 57.3 8.4e-292 1000.0
Clacu08g1060 . 115 1234 Histidine Kinase Gene Family AT1G09570 80.2 0.0e+00 1831.6
Clacu08g1064 . 18 1141 Histidine Kinase Gene Family AT1G09570 71.5 0.0e+00 1612.4
Clacu02g0294 . 18 1112 Histidine Kinase Gene Family AT1G09570 54.8 0.0e+00 1205.3
Clacu05g0764 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.4 0.0e+00 1196.0
Clacu05g0764 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1670.6
Clacu03g0719 . 31 1051 Histidine Kinase Gene Family AT2G18790 60.8 0.0e+00 1243.0
Clacu08g1060 . 135 1168 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1090.1
Clacu02g0294 . 26 1069 Histidine Kinase Gene Family AT2G18790 52.2 0.0e+00 1078.2
Clacu08g1064 . 23 1075 Histidine Kinase Gene Family AT2G18790 50.7 5.4e-309 1057.4
Clacu02g0294 . 12 1116 Histidine Kinase Gene Family AT5G35840 61.6 0.0e+00 1362.4
Clacu05g0764 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.9 0.0e+00 1152.5
Clacu08g1060 . 123 1228 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1117.1
Clacu05g0764 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.7 0.0e+00 1708.7
Clacu03g0719 . 32 1113 Histidine Kinase Gene Family AT4G16250 59.0 0.0e+00 1282.7
Clacu08g1060 . 122 1229 Histidine Kinase Gene Family AT4G16250 52.9 0.0e+00 1137.9
Clacu02g0294 . 26 1115 Histidine Kinase Gene Family AT4G16250 52.5 0.0e+00 1117.4
Clacu03g0719 . 15 1113 Histidine Kinase Gene Family AT4G18130 63.2 0.0e+00 1370.5
Clacu05g0764 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.9 0.0e+00 1272.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005508 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47713 PF02518 HATPase_c 9.70E-28 CL0025 Clacu TR