Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1754 ATGGTCTGCGAGATGGAGACTGGTGTTATTGAAGATATGGACATCGAAGCGGTTCCTTCTATGTGGCCTGAGGATGTTGGACCAGATGTTAGAAAGCAGTTCAACGTAGAAAGGCCAGGAGCAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCGACGATTGTTGATTTCAAGCGTCTTATAGAGTTAACTAACTATACTGAGAAAGGATCTTCACAATTACAATATCTTGCAAAACAGTGGGAGTATAAGCAAGCAAATGCTGTGCGTCTCCTTAAAGAAGAACTTGACATTCTAAGCAAGCAGAGGAAAGAAGTTGAGCTCAAGAAATTAAAAATATTAGAAGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCAATTTCTATTTTGGAAGAATCTTGTGATCTATGGCAAGATATTCCAAGTAGGAAAACTGATTTCGTTGTTCAAAGTAAGAGAGTCGAAATTGATGCAGAGTATGATACTGTGACATACTGGAAGCAACGAGCCATGGATCTGGAAAAATTATTGGAAGCAAGTCTACAGCGAGAGCAGATGCTTGCAGAGAAGCTTAAGGAAAACATAAAAAATATTGAAAAGCAGTCCTCTCCAGTTGAGGAGTTGTCACAAATTCTTAAAAGAGCCGACAATTTTTTGCATTTTGTTCTGCAGAATGCACCAGTGGTTTTTGGTCATCAGGACAAAGAGTTGCGCTACCGATTTATCTACAATCATTTTCCAAGTTTGCAAGAAGAGGATATTATAGGAAGAACAGACGTTGAAATTTTCAGTGGTGCTGGTGTTAAGGAATCTCAAGATTTCAAGAAAGAAGTTCTGGAGAAAGGGTTACCTGCAAAGAGGGAGATTCAGTTTGATACCGAATTATTTGGGCTGAAGACCTTTTTGATTTATGTTGAACCTGTCTTTAGCAAGGCTGGAGAGACAATTGGAATAAATTATATGGGAATGGACATAACCGATCAGGTTAAAAAACGAGAAAAGATGGCAAAGCTTCGCGAGGAGATTGCAGTACAAAAAGCCAAGGAATCAGAGCTGAACAAAACAATTCATATCACGGAGGAAACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCACATGAAATTAGATCTCCACTGGCTGGAGTGGTTAGTATGGCTGAGATTCTGTCCACCACGAAACTTGATCGGGAGCAACAACATCTGTTAGATGTTATGCTGTCTTCAGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGACCTTTCTAAGGTTGAATCAGGAGTAATGAAGTTGGAAGCTACAAAATTCCGTCCAAGAGAGGTTGTAAAACATGTGCTACAGACTGCTGCCGCATCATTGCGAAAATTCTTGGTTCTGGAGGGACGTATAGCCGATGATGTTCCTATAGAGGTCATTGGAGATGTTCTTAGGATTCGGCAAATCCTCACCAACTTGATCAGCAACGCAATCAAGTTCACTCATCAAGGGAAGGTTGGAATTAACCTTTATGTGTTACCCTATCCACCCATTGGGACAGGAGAAGAATGCCATAAGAAATCAACAGCCGATAACTCAACAGTTTCGGTAAATGGTTTGCAAGAAGGAACATGTCTTCCAGCCCCTCAAAATGGCTTGTGTGGCCATAAACACGGTGATAGAAATCACTTGCATTGTGATGCACTAGGAACCCCAAGCAAGAGCGAAACCACAATGAATGGAAACAGAGAAAACAAGTCTTGTTCAGCTGAAACGACGGTATGGATACGCTGTGATGTATATGACACAGGAATTGGAATACCAGAAAATGCACTACCAACCCTTTTTAAGAGGTACATGCAAGCGAGTGCCGATCATGCTCGAAAGTATGGAGGGACTGGACTTGGGCTGGCAATATGCAAACAGCTGGTTGAATTGATGGGTGGCCATCTCACTGTTTCCAGCCGAGAAAACCATGGATCTACATTTACATTTGTGTTGCCATACAAGGTTTCAACCACCTGTAGTCCTTCCGACGATTCCGACGAGCTCTCGGATGACGAGTCTACAAATGATGAAATGACTGAGGGCTTTTTCCAATTCCAACCCCACAGTTTTAGTTCCCTATCATCTTCCAACGGATCCACAAGGATCCCAAACTCATTGATGCATACAACTGGGTATCCCACCTCAACCAAACTCAATGGATTTGCTGAAGGTGGTTCTTATCCTATTCCCTCAAACAACATCGCACCACAACAGACTGCTTCTCCTAGAGATGCCCGTTACACCAATGCCGCAGTAAACTCAAGCGAGTCACAATGTTTATCAAGTCAGATCAACTCAAATCTTGATAACCAAAACCAATCAGACACAAATGCTTGGTTGCAAAATGCCAGTGGCGTGAATTCTGTTTACAGATCAGAAACAACAAAGCAAGAAGATAGATTGGAAAAACAAAGTAATAAACTTCAAAAAACAGATCAGGGGAAAGAGAGATCCGATGCAAGTAATCACTGCAGAAATAGCAGTTGTGGTTCTGAAGTAACAGTGGCATTGGAGCCCAGAATTCTTCTTGTTGAGGATAATAAGACCAATATTATGGTGACTCAGTCCATGATGAAGAAGTTTGGCCAAAAAATCGATGTCGTAACTAACGGTATTGAAGCTGTTCGTGCAGTTCAACGACGTTCGTATGATCTCATTCTCATGGATGTATTCATGCCAGTTATGGATGGGCTTGAAGCTACAAGGTTAATTCGTTCTTTTGAGGAAACAGGCAGCTGGGAGGCAGCTGTAAATGCTGGAATAATCCAACCAACTACACCTTCTTGGACTCCCTCCTCCCGAAACAGGATGCCCATCATTGCTATGACGGCGAATTCAATGTCAGAAAGCGCAGATGAGTGTTATGAAAATGGTATGGACTCATTCGTATCAAAGCCAATCACGTTCCAGAAGTTGAAAGAATGTCTTGAACGATATTTACCACAACCTCCCTTGTAA 3009 41.61 MVCEMETGVIEDMDIEAVPSMWPEDVGPDVRKQFNVERPGADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLKEELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEESCDLWQDIPSRKTDFVVQSKRVEIDAEYDTVTYWKQRAMDLEKLLEASLQREQMLAEKLKENIKNIEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKELRYRFIYNHFPSLQEEDIIGRTDVEIFSGAGVKESQDFKKEVLEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLAGVVSMAEILSTTKLDREQQHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPIGTGEECHKKSTADNSTVSVNGLQEGTCLPAPQNGLCGHKHGDRNHLHCDALGTPSKSETTMNGNRENKSCSAETTVWIRCDVYDTGIGIPENALPTLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVSSRENHGSTFTFVLPYKVSTTCSPSDDSDELSDDESTNDEMTEGFFQFQPHSFSSLSSSNGSTRIPNSLMHTTGYPTSTKLNGFAEGGSYPIPSNNIAPQQTASPRDARYTNAAVNSSESQCLSSQINSNLDNQNQSDTNAWLQNASGVNSVYRSETTKQEDRLEKQSNKLQKTDQGKERSDASNHCRNSSCGSEVTVALEPRILLVEDNKTNIMVTQSMMKKFGQKIDVVTNGIEAVRAVQRRSYDLILMDVFMPVMDGLEATRLIRSFEETGSWEAAVNAGIIQPTTPSWTPSSRNRMPIIAMTANSMSESADECYENGMDSFVSKPITFQKLKECLERYLPQPPL 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26562297 26570481 + ClG42_05g0175400.10 Clacu05g1754 249501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1754 1002 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 594 670 IPR003594 -
Clacu05g1754 1002 FunFam Putative histidine kinase 5 359 436 - -
Clacu05g1754 1002 CDD HisKA 370 432 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Clacu05g1754 1002 SMART HKATPase_4 482 672 IPR003594 -
Clacu05g1754 1002 MobiDBLite consensus disorder prediction 807 846 - -
Clacu05g1754 1002 CDD REC_hyHK_CKI1_RcsC-like 858 993 - -
Clacu05g1754 1002 FunFam Histidine kinase 5 850 998 - -
Clacu05g1754 1002 Gene3D - 367 435 - -
Clacu05g1754 1002 Coils Coil 808 828 - -
Clacu05g1754 1002 MobiDBLite consensus disorder prediction 810 839 - -
Clacu05g1754 1002 Coils Coil 92 112 - -
Clacu05g1754 1002 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Clacu05g1754 1002 ProSiteProfiles Response regulatory domain profile. 857 997 IPR001789 GO:0000160(InterPro)
Clacu05g1754 1002 MobiDBLite consensus disorder prediction 745 771 - -
Clacu05g1754 1002 CDD HATPase_EvgS-ArcB-TorS-like 487 669 - -
Clacu05g1754 1002 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 670 IPR036890 -
Clacu05g1754 1002 Gene3D - 436 676 IPR036890 -
Clacu05g1754 1002 Pfam Response regulator receiver domain 858 925 IPR001789 GO:0000160(InterPro)
Clacu05g1754 1002 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Clacu05g1754 1002 SUPERFAMILY CheY-like 856 998 IPR011006 -
Clacu05g1754 1002 Coils Coil 181 208 - -
Clacu05g1754 1002 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Clacu05g1754 1002 MobiDBLite consensus disorder prediction 747 771 - -
Clacu05g1754 1002 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 40 998 - GO:0000155(PANTHER)|GO:0005887(PANTHER)|GO:0009927(PANTHER)|GO:0046777(PANTHER)
Clacu05g1754 1002 Coils Coil 342 362 - -
Clacu05g1754 1002 SMART REC_2 856 993 IPR001789 GO:0000160(InterPro)
Clacu05g1754 1002 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Clacu05g1754 1002 PRINTS Bacterial sensor protein C-terminal signature 632 650 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Clacu05g1754 1002 PRINTS Bacterial sensor protein C-terminal signature 656 669 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Clacu05g1754 1002 SMART HisKA_10 371 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Clacu05g1754 1002 Gene3D - 853 997 - -
Clacu05g1754 1002 Gene3D PAS domain 213 348 - -
Clacu05g1754 1002 FunFam Histidine kinase 5 213 348 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1754 Clacu-Chr5:26562297 Clacu11g0252 Clacu-Chr11:2280269 9.10E-50 dispersed
Clacu05g1754 Clacu-Chr5:26562297 Clacu02g0278 Clacu-Chr2:2520926 6.30E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47713 PF02518 HATPase_c 9.70E-28 CL0025 Clacu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1754 - - - 0.0