Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1756 ATGCTTGCTTCCAAGGCTGTAGCTGAGGCTCACAAAAAGAGTGGTGTACCGTTGTTGCATGTTTGCCACGTGTGTGGTGTGGACCGGAGTAAATACGACCATTCCAACGGCTCTTCGAAATCTATCACGGTAGCATTGACTCAGTCCTACCGTAAGCTCACCTCTTCCTACGGCGACGCGTTCCAGTTCAATTTGGGCCGTTGGGCAGCTCCACGGGCATGTGAGGAACGGCTTATTCCTTCCACATCTGTAACCATAGCTACTAGATACTGTTTGTTAGTTTTCTTTTTTCTTTCTTCCATTTTGATCGAAGAGATTGGAGCTGGGCATTTTCAGAGCCTAGACAGTATGGGCTATCTGAATTCAGTCTTGTCTTGCTCGAGCCAGATTCATGCTGCTGAGGAGGCACCTGTAAGCGGCGGAGGATTAAGTCAGAATGGAAAGTTCAGCTACGGATATGCTAGCTCTCCTGGGAAGAGATCTTCGATGGAAGATTTTTATGAGACACGAATAGATGGTGTGGAAGGAGAAATAGTTGGTCTATTTGGTGTTTTTGATGGTCATGGCGGAGCTCGAGCTGCGGAGTATGTTAAGCACAATCTTTTTAGTAACTTGATCAGCCATCCAAAGTTCATATCGGATACCAAGTCCGCTATAGCTGATGCATACAACCACACAGACACAGAATTTCTTAAGTCGGAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCCATCCTAGTTGGTGACCGCTTACTTGTTGCAAATGTGGGTGACTCTAGAGCTGTTATTTGCCGGGGTGGCACTGCCATTGCTGTCTCTCGAGATCATAAGCCTGACCAAACTGATGAGCGACGACGAATTGAGGATGCTGGAGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCACGTGCATTTGGTGATAGGTTGTTAAAGCAATATGTTGTTGCTGACCCTGAAATTCAGGAGGAAAAGATTGATAGCTCGCTCGAATTTCTTATACTTGCAAGTGATGGACTGTGGGATGTTGTCTCTAATGAGGAAGCCGTTGCTATGACTAAACCAATTCAGGACCCAGAAGAGGCAGCGAAGAGGTTGATGCAAGAAGCATATCAGAGAGGCAGCGCAGATAACATTACTTGTGTCGTCGTTCGTTTCTTGGCGAATCAAGGAAGTCCCTCTCTTGCAACATCTGGGTAA 1230 46.34 MLASKAVAEAHKKSGVPLLHVCHVCGVDRSKYDHSNGSSKSITVALTQSYRKLTSSYGDAFQFNLGRWAAPRACEERLIPSTSVTIATRYCLLVFFFLSSILIEEIGAGHFQSLDSMGYLNSVLSCSSQIHAAEEAPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLISHPKFISDTKSAIADAYNHTDTEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGTAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEFLILASDGLWDVVSNEEAVAMTKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGSPSLATSG 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26642957 26650799 - ClG42_05g0175600.10 Clacu05g1756 249503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1756 409 SUPERFAMILY PP2C-like 144 396 IPR036457 -
Clacu05g1756 409 Pfam Protein phosphatase 2C 179 389 IPR001932 -
Clacu05g1756 409 ProSitePatterns PPM-type phosphatase domain signature. 181 189 IPR000222 GO:0043169(InterPro)
Clacu05g1756 409 SMART PP2C_SIG_2 161 396 IPR001932 -
Clacu05g1756 409 SMART PP2C_4 140 394 IPR001932 -
Clacu05g1756 409 FunFam probable protein phosphatase 2C 59 142 400 - -
Clacu05g1756 409 ProSiteProfiles PPM-type phosphatase domain profile. 150 396 IPR001932 -
Clacu05g1756 409 CDD PP2Cc 149 396 IPR001932 -
Clacu05g1756 409 Gene3D - 142 400 IPR036457 -
Clacu05g1756 409 PANTHER PROTEIN PHOSPHATASE 133 395 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1034 Clacu-Chr5:9160188 Clacu05g1756 Clacu-Chr5:26642957 6.90E-94 dispersed
Clacu05g1756 Clacu-Chr5:26642957 Clacu08g0784 Clacu-Chr8:17866112 5.00E-95 dispersed
Clacu05g1756 Clacu-Chr5:26642957 Clacu11g1596 Clacu-Chr11:27124233 1.40E-52 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1756 K17506 - csv:101216117 574.704