Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1760 ATGGCCAAAACCGCGTCTTATAATCAGATATGCAACTCGTTTTTAGTTCTGTTGGTTTTGTCTGTTATTCCGCCGTCGACGGTGGCATTGTCGTTCGGATTTTACGCTGCCACGTGTCCTGCGGCAGAGCTTATGGTCAGGAGTACCGTCAGATCGGCTTCCTCCGTTGACCCCACCGTCCCCGGCAAGCTCCTCCGGTTGCTCTTCCATGACTGTTTTGTTGAGGGGTGCGATGGTTCTGTTTTGGTAGAAGGAAACGGAACGGAAAGAAGCGATCCGGCCAACAGGTCGCTTGGAGGATTTGAAGTAATCGATTCAGCTAAGAGAACTCTAGAAATTTTCTGTCCTGGAACTGTTTCTTGTGCCGACATTGTCGTTTTGGCCGCCAGAGATGCAGTTGAATTCACCGGTGGGCCCTCCGTCGAAGTCCCGACGGGCCGGAGAGACGGAAAGATATCGGCGGCGTCAAATGTCCGACCAAACATCGTCGACACAAGCTTTTCAGTAGACCAAATGATGAATCTCTTCTCATCAAAAGGGCTGTCGGCGGACGATCTCGTCATTCTCTCTGGGGCCCATACCATCGGAACTGCCCACTGCAGCGCCTTCAGCGACCGCTTCCGACGAAACCCAAACGGCAAACTGACCCTCATCGACGCCTCTCTCGACGGCGCTTACGCCGAGGAGCTCATGCGGCGGTGTCCCGCTGGCGCCGCCTCTTCCGCCACCGTTGAAAACGATCCGGCGACGGCGTTTGTGTTCGACAATCAGTACTACAGAAACATTCTGTCACACAAAGGGCTGTTTCAGTCAGATTCCGTTCTGATCAGCGACGGCCGGACCAGGGCTCAGGTGGAGAGCTTTGCAAAGGATCAGATTGGGTTTTTTGAAAACTGGGCTCAGTCGTTCTTGAAACTCAGTAGCATTGGAGTCAAGAGTGGGGATGAAGGGGAAATTAGACTGTCTTGTTCTACAAATAATGTTTGA 987 52.68 MAKTASYNQICNSFLVLLVLSVIPPSTVALSFGFYAATCPAAELMVRSTVRSASSVDPTVPGKLLRLLFHDCFVEGCDGSVLVEGNGTERSDPANRSLGGFEVIDSAKRTLEIFCPGTVSCADIVVLAARDAVEFTGGPSVEVPTGRRDGKISAASNVRPNIVDTSFSVDQMMNLFSSKGLSADDLVILSGAHTIGTAHCSAFSDRFRRNPNGKLTLIDASLDGAYAEELMRRCPAGAASSATVENDPATAFVFDNQYYRNILSHKGLFQSDSVLISDGRTRAQVESFAKDQIGFFENWAQSFLKLSSIGVKSGDEGEIRLSCSTNNV 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26748561 26752166 - ClG42_05g0176000.10 Clacu05g1760 249507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1760 328 Pfam Peroxidase 46 291 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g1760 328 Gene3D - 33 327 - -
Clacu05g1760 328 FunFam Peroxidase 33 174 - -
Clacu05g1760 328 Gene3D Peroxidase, domain 2 163 306 - -
Clacu05g1760 328 SUPERFAMILY Heme-dependent peroxidases 30 327 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g1760 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Clacu05g1760 328 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g1760 328 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g1760 328 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g1760 328 PRINTS Haem peroxidase superfamily signature 61 75 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g1760 328 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g1760 328 FunFam Peroxidase 163 306 - -
Clacu05g1760 328 PANTHER - 17 325 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g1760 328 PRINTS Plant peroxidase signature 245 260 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g1760 328 PRINTS Plant peroxidase signature 39 58 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g1760 328 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g1760 328 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g1760 328 PRINTS Plant peroxidase signature 63 83 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g1760 328 PRINTS Plant peroxidase signature 261 278 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g1760 328 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g1760 328 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g1760 328 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g1760 328 ProSiteProfiles Plant heme peroxidase family profile. 29 327 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g1760 328 CDD secretory_peroxidase 30 324 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1760 Clacu-Chr5:26748561 Clacu11g0922 Clacu-Chr11:8884020 1.10E-63 dispersed
Clacu05g1760 Clacu-Chr5:26748561 Clacu08g1576 Clacu-Chr8:25585299 7.60E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1760 K00430 - csv:101211842 581.637