Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1770 ATGACTTTGTTCGAGATCAACACATTCTCTTCAAAGGAAATCGCACCCCTGATTGTTTATGTTGTTGTGCCTCTACTGGAATGCCAGAATTTCATAGCCATGGGAAATGAATCAGGCGAATGTTGTGACCTTGAGCGGGTTGCTAAGGCTCATACGACAGGATGCTGTGATATCGAAAATGTTGTCGTTGGCATTGTATTGCATTTGATCGAAACCTTCAAAACTGTTTACCGTAGCAATCTAGAAGATGAATTTGTTCATGATCACGTGAAGGTGTGTTCTGTTGAAGAAGGAATGGGTAGCCAAACTATTCCAAGCCATGAACGCTCCAGAACATATTGGACACCAGTAATGGAACGTTACTTTATTGATCTTATGTTGGAGCAGCTTCACCGAGGAAACCGGAGTGGGCACACTTTCAACAAGCAGGCATGGACGGATATGCTTACAATGTTCAATACAAAATTTGGATCTCAGTATGATAAAGATGTATTGAAGAGTCGTTATACAAATTTGTGGAAGCAATTCAACGATGTAAAGAATCTATTAGGTCATAGTGGTTTTTCCTGGGACGAAGGTCGACAGATGGTAATAGCTGATGACTATGTATGGGACATTTACATCAAGGCCCATCCGGATGCACGATCCTATAAAACTAAAGCAGTACTGAATTTTAATGATTTATGCCTGATATATGGATACACTAATGCTGATGGAAGATACAGTCGATCAAGTCATGATATAGACTTTGATGATGAAGTCCAGGCTGTAAATACAGGTGATACCATTGGTTGCCCTGCACCTCTAGATCGTCCAAGGACAGATTGGACGCTAGAAATGGATCAGTATTTCATTGAGCTTATGCTGGATCAAGTAGGAAGAGGCAATAAGATGTCTAATACATTCAATAAGCAAGCATGGACTGATATGCTTGCATTGTTTAATGCTAAATTTGGTCCTCAACACGGTAAAAGGGTGTTAAGACACCGATATAAGAAATTATGGAAATACTACAGTGATATTATGAATCTACTTCAACAAAATGGATTTTGCTGGGATGAAGTACAGCAAATGGTGGTTGCTGCTGATGATATTTGGGATGCTTATGTTAAGACACACCCATTTGCACGAAGTTATAGAATGAAAGCCTTGCCAAACTACTACGACTTGGTTCTCATATATGGAAATGTAATTGATAATGAGAACCAGAATCATTTGCATCTAGATAAAAACCTTCCAGACGACATATCAGAGGTAAAGGGTGGAGAATCAAATGAGAATCAAATGACAACTGTCAGCGATCGTACAAGAACATATTGGACGCCCCCGATGGATCGTTACCTCATAGACTTGCTACTAGAACAGGTGCATAGGGGCAATAAAATAGGTCAAACATTTGTTAGTCATGCTTGGACCGACATGGTTACTGCTTTCAATGCCCAATTCAGAGCTCACCATGACAAGGATGTGCTGAAAAATCGATACAAACATTTGAGACGGTTGTATAATGAAATAAAGATTCTTCTCGAACAGAGAGGATTTTCATGGGATGAAAATCGTGAAATCGTTACTGCTGATGATCATGTTTGGGATGCTTATACCAAGGATCACCCTGATTCCCGATCATATAGAGTTAAAACTGTACCAAGCTATCACAAGTTATGTTTTATATTTGGTGAAGAAAGTTCTGACAGAAGATATAGTCGTTTGGCCCATGATACCGATCCAAGTAATGGAGTGCCTGTTCTGATGGCTGATGAAAGGAAAAATGATCAAGTCCCTGCTGAACCTTTACCCATGATAGATTGGACACCGCAGATGGATCGCTCTTTTATTGATCTTATGCTTGAACAATTGCAAGAAGGAAATACTTTTGGCCAAGCATTTAGCGAGCAAGCATGGACTCTCATGATTATATCATTCAATGAGAGGTTCAAACTTCAATGTGACAGATATGTTCTAGAAGATCGTTATTTCTGGTGGATGAAGCAATACAGCAACATCTACAATCTTCTCAATCGCAGGGGATTCATGTGGAATGAATCTCAACAATTGATTACTGCTGAGGATGAACTTTGGGAAGCTTATGGAAAGGAACATCCAGATGCCCTCTTGTACAAAGACAAATTCCTCGGCTACTATACGGATTTGTGCAAGATTTTTGGGAACCTTTTAGATAGAGTAGTCAATGGTCAGTGTACAGGTGAAACCGATGCCGAAAATGTGGAGATTAAGATGGGTGAAAATGAACACCTACTCCTAACATCGAGAGAGATTCAAAATTCTCAACAGAGAAAGCGTCCTGCAGAGACGATATCATTGGACACAGAGCTCTCTAAGAAAGTGCATAGAACCGAGAACAACGTGCAGAAAGCTCTCTCTGAGATGGCAGGCGTAGTCACTAGATTGGTGAACATGAAACAGCACCATAACTATAAAGCTGTGGAAGGTGCTATTGATGCACTTCAAGCTATACCAGACATCGATGATGAACTTATGTTGGATGCTTGTGACCTCTTAGAAGATGAAAGGAAGGCAAAAACATTTGTGGCTTTGGATGCAACCCTGCGAAAGAAGTGGTTACTAAGAAAGCTTCGTTCGCAATAG 2607 40.24 MTLFEINTFSSKEIAPLIVYVVVPLLECQNFIAMGNESGECCDLERVAKAHTTGCCDIENVVVGIVLHLIETFKTVYRSNLEDEFVHDHVKVCSVEEGMGSQTIPSHERSRTYWTPVMERYFIDLMLEQLHRGNRSGHTFNKQAWTDMLTMFNTKFGSQYDKDVLKSRYTNLWKQFNDVKNLLGHSGFSWDEGRQMVIADDYVWDIYIKAHPDARSYKTKAVLNFNDLCLIYGYTNADGRYSRSSHDIDFDDEVQAVNTGDTIGCPAPLDRPRTDWTLEMDQYFIELMLDQVGRGNKMSNTFNKQAWTDMLALFNAKFGPQHGKRVLRHRYKKLWKYYSDIMNLLQQNGFCWDEVQQMVVAADDIWDAYVKTHPFARSYRMKALPNYYDLVLIYGNVIDNENQNHLHLDKNLPDDISEVKGGESNENQMTTVSDRTRTYWTPPMDRYLIDLLLEQVHRGNKIGQTFVSHAWTDMVTAFNAQFRAHHDKDVLKNRYKHLRRLYNEIKILLEQRGFSWDENREIVTADDHVWDAYTKDHPDSRSYRVKTVPSYHKLCFIFGEESSDRRYSRLAHDTDPSNGVPVLMADERKNDQVPAEPLPMIDWTPQMDRSFIDLMLEQLQEGNTFGQAFSEQAWTLMIISFNERFKLQCDRYVLEDRYFWWMKQYSNIYNLLNRRGFMWNESQQLITAEDELWEAYGKEHPDALLYKDKFLGYYTDLCKIFGNLLDRVVNGQCTGETDAENVEIKMGENEHLLLTSREIQNSQQRKRPAETISLDTELSKKVHRTENNVQKALSEMAGVVTRLVNMKQHHNYKAVEGAIDALQAIPDIDDELMLDACDLLEDERKAKTFVALDATLRKKWLLRKLRSQ 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26815150 26823612 + ClG42_05g0177000.10 Clacu05g1770 249517

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1770 868 PANTHER EXPRESSED PROTEIN 105 256 - -
Clacu05g1770 868 Pfam Myb/SANT-like DNA-binding domain 603 696 IPR024752 -
Clacu05g1770 868 Pfam Myb/SANT-like DNA-binding domain 113 207 IPR024752 -
Clacu05g1770 868 Pfam Myb/SANT-like DNA-binding domain 439 533 IPR024752 -
Clacu05g1770 868 Pfam Myb/SANT-like DNA-binding domain 276 369 IPR024752 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1770 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1716 Clacu-Chr3:30922617 Clacu05g1770 Clacu-Chr5:26815150 1.20E-171 dispersed
Clacu05g1770 Clacu-Chr5:26815150 Clacu10g0548 Clacu-Chr10:6616616 1.70E-07 dispersed
Clacu10g0547 Clacu-Chr10:6607107 Clacu05g1770 Clacu-Chr5:26815150 2.40E-07 dispersed
Clacu05g1770 Clacu-Chr5:26815150 Clacu09g0547 Clacu-Chr9:4670671 5.20E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g595 . . . . Bpe02g01266 . . . . . . . Car09g00350 . . . Cpe06g00286 . . . . . . . Cla05g01667 Cam05g1782 Cec05g1788 Cco05g1847 Clacu05g1770 Cmu05g1655 Cre05g1784 Cone4ag1737 Cone7ag1657 Cone17ag0974 Cone20ag0315 . . . . . Blo18g00251 Bda01g01017 . . . . . . . Cmo09g00402 Cma09g00399 . . . . . Bhi09g03029 . . . . . . . . . . . . . . . . Cme07g00135
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006000 1 7 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 39