Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1773 ATGCCCGCGCTTACAAGCTCTGGTCGGCGCGCAAAGAGCTTTTCACTTCGTCGGTTGACGGACAAAGCCATGGCTCGCCGCCATAGCCAAGCTCAACCGTCCTGTTGGAAGCGTGTGCTACAGTTAATCGAGTGCTTTTTCGTGCAATTTCTCGTGCGATTGGTCTCTCTCGTGATTGATATGGGTATTTACCTCAGCAATCCCAAAACAGAGAAGTCCTCTGAAGATGGTGAGAATAGACGGCTTAGATATGGACTATCGTCTATGCAAGGATGGCGTGCCACAATGGAAGATGCTCATGCTGCAGTTCCTGATCTGGATGCCTGCACTTCCTTCTTTGGTGTTTATGATGGCCATGGAGGTAAGGTGGTTGCAAAGTTCTGTGCCAAGTACCTACATCAGCAGGTGAAGAAAAATGACACTTTTGCGGCTGGAGATATAGGAACTTCTGTGCAGAAAGCATTCTTCAGAATGGATGAAATGATGCGTGGACAAAGAGGATGGAGAGAATTAGCTGTTTTGGGTGATAGATTGAACAAGTTCACTGGCATGATAGAAGGGTTAATCTGGTCCCCAAAAAGCAGTGATGCAAATGACCTGGCTGATGATTGGGCTTTTGAGGAGGGTCCACACTCTGATTTTACTGGCCCAACTTCCGGGTGTACAGCTTGTGTTGCAATTATTAGAAATAACAAACTAGTTGTTGCAAATGCTGGTGATTCTCGCTGTGTGCTATCAAGAAAGGGCCAGGCCCACAGTCTCTCTAGAGATCACAAGCCTGATCTTGAGGCTGAGAAGGATAGAATTCTGAAAGCTGGTGGTTTTATTCATGCTGGACGAGTCAATGGTAGCTTGAACCTTGCCAGAGCTATTGGTGACATGGAATTTAAGCAGAATAAATTTTTACCTGCTGAAAAGCAAATTATTACTGCAAACCCTGATGTAACCACTGTTGAGCTTTGCGACGATGATGAGTTTATTGTGATAGCTTGTGATGGTATATGGGATTGCATGTCTAACCAGCAACTGGTAGATTTTATACATGAACAGCTAAAATCAGAAACTAAACTCTCTGTGGTTGTTGAGAGAGTACTTGATAGGTGTTTGGCACCTTCCACTGCTGGTGGTGAGGGATGTGATAACATGACCATGATTTTGGTGCAGTTTAAGAAAGATAATCAATCAAACTCCCCCATAGATGGCCAAACTTCACCTGCCGCCACTGCCTGTGCCAAACCAGACAGTACCGAATCGATGCAGAAAGATGAATTGAGCCACAGACTTTGA 1287 45.14 MPALTSSGRRAKSFSLRRLTDKAMARRHSQAQPSCWKRVLQLIECFFVQFLVRLVSLVIDMGIYLSNPKTEKSSEDGENRRLRYGLSSMQGWRATMEDAHAAVPDLDACTSFFGVYDGHGGKVVAKFCAKYLHQQVKKNDTFAAGDIGTSVQKAFFRMDEMMRGQRGWRELAVLGDRLNKFTGMIEGLIWSPKSSDANDLADDWAFEEGPHSDFTGPTSGCTACVAIIRNNKLVVANAGDSRCVLSRKGQAHSLSRDHKPDLEAEKDRILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAEKQIITANPDVTTVELCDDDEFIVIACDGIWDCMSNQQLVDFIHEQLKSETKLSVVVERVLDRCLAPSTAGGEGCDNMTMILVQFKKDNQSNSPIDGQTSPAATACAKPDSTESMQKDELSHRL 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26860648 26869345 - ClG42_05g0177300.10 Clacu05g1773 249520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1773 428 Gene3D - 60 390 IPR036457 -
Clacu05g1773 428 MobiDBLite consensus disorder prediction 394 428 - -
Clacu05g1773 428 SMART PP2C_4 73 387 IPR001932 -
Clacu05g1773 428 MobiDBLite consensus disorder prediction 394 415 - -
Clacu05g1773 428 ProSitePatterns PPM-type phosphatase domain signature. 112 120 IPR000222 GO:0043169(InterPro)
Clacu05g1773 428 CDD PP2Cc 83 389 IPR001932 -
Clacu05g1773 428 PANTHER PROTEIN PHOSPHATASE 2C 70 390 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Clacu05g1773 428 Pfam Protein phosphatase 2C 83 164 IPR001932 -
Clacu05g1773 428 Pfam Protein phosphatase 2C 215 373 IPR001932 -
Clacu05g1773 428 SUPERFAMILY PP2C-like 63 390 IPR036457 -
Clacu05g1773 428 ProSiteProfiles PPM-type phosphatase domain profile. 83 389 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1773 Clacu-Chr5:26860648 Clacu09g0481 Clacu-Chr9:4141035 3.50E-35 dispersed
Clacu05g1773 Clacu-Chr5:26860648 Clacu09g0339 Clacu-Chr9:2882172 9.90E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1773 K17499 - csv:101211604 682.559