Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g1774 ATGCAGGCAGATCAGACGGTGATAAGTTTGAGACCTGGTGGTGGCGGTGGCTTTCGTGGAAGCAGATTTGTTACACCTCGCTTCGATTCATCCTCCGCCGACTCTTCGTCGCTTCGTCCACATGGCGGCGCTGCTTCAATCCTCAAGACTGGCGATCTACGGTTTGAAGGTCGTGAGCGAATGCAATACACTCGAGACCAGCTTCTGCAGCTTAGGGAGGTTGCAACAGTCCCTGAGGATATCTTGAAAGTCAAACTAGAAGTTGAGTCAGAGATAGTTGGGGAAGATCAAACATGGGCCCGTGCTGAAAGCAATCAGCAATCACAATCTCAAGGCCGTTACTTTGAGGCAGACAATCGAGATTGGCGTGGTCGATCTGGACAGTTACCCGGCTCCACAGAGGAAGGATCTTGGGAAGCAAACAAGGATTTGTCTGGACAATCTGAGTTGAGGTTCCAAGACTCAAATAATAGGAATCAAGTTTCTGGTAACCAAGGGGTTGGCACTGCACCTGCTCTCATCAAGGCTGAAGTTCCTTGGTCAGTTAGAAGAGGTAATATCTCAGATAAGGAACGAGTTTTGAAGACAGTTAAAGGTATACTGAATAAATTGACTCCAGAAAAGTTTGACATACTCAAAGGTCAACTGATTGACTCAGGAATTACATCCGCTGATATTTTGAAGGATGTTATATCGCTTATATTTGAGAAGGCCGTATTTGAGCCCACATTTTGCCCTATGTATGCACTTTTGTGCTCTGACCTCAACGAGAAGCTTCCTTCATTTCCATCCGAAGTGCCTGGAGAGAAAGATATCACTTTTAAACGTGTTCTCTTAAATATTTGCCAAGAGGCATTTGAAGGTGCTGATAACATGAGGGCAGAAATCAGGCAGATGACTAGTCCTGAGCAGGAAACGGAAAGAAGAGATAAAGAAAGAATGGTTAAGCTTCGAACTCTAGGAAACATTCGCCTGATAGGTGAGCTTCTGAAACAGAAGATGGTGCCTGAAAAGATTGTTCACCATATTGTTCTGGAGCTGTTGGGGCCTGACCCTAAAATATGCCCTGCAGAGGAGAATGTCGAGGCTATTAGTCAGTTTTTTAACACAATAGGTAAGCAACTGGATGAGAGCCCAAAATCCCGACGGGTCAATGATGTATATTTCAGCCGTTTGAAGGAGCTCACTGCAAACACCCAATTAGCACCTAGGTTGAGATTTATGGTCCGTGATGTTCTTGATTTGCGGGCCAATAACTGGGTTCCTAGACGTGAAGAGGTGAAAGCGAAAACCATCACTGAAATTCATTCAGAGGCTGAAAAGAATCTAGGGCTCCGTCCAGGTTCAATGGCAATGATGAGAAATGGCCGTAATACCGAGGCACTTGGGGGATTAAGTCCTGGTGGTTTTCCAGTTGCCCGACCTGGCTTTGGAGGTATGATGCCTGGAATGCCAGGAACCAGGAAAATGCCTGGGATGCCTGGACTTGAGTCAGACAATTGGGAAGTTCCCAGATCCCGAGTAATGCCAAGGGGCGAAACCGGAGGTCCTATTGCGCGCGGCCAGTCATCATTAACGGGCAAAACACCTTCCATTAATTCAAAATATTTACCTCAGGGAAGTGGAGGTGTAATAACAGGGAAAACAAGTGCCTTGCTACAGGGTAGTGCCGCTGCATCTCCTGCCCGACCACCGAGTTCCATGCCTGGAACTCAGCCTGTTCCTCACAACCCTAAACCAGTTGCTCCAGTTACACCTATCATATCTTCGCCTCCGAAGCCTGTAGCTCCTGCTGCATCCAATCTGGTTGATCTTCGCAAGAAAACCGTTTCGCTGCTTGAGGAATACTTCAGCGTACGGATTCTTGATGAAGCTCTACAGTGTGTAGAGGAGCTGAAATCCCCAGCTTATCACCCTGAGGTTGTTAAAGAATCTCTTACCATTGCACTTGAGAAGATTCCACCATGTGTAGACCCAGTTGTTAAACTTCTTGAGCACTTGCTTCACAAGAATGTCTTGACTGAAAAGGATATAGGTACCGGGTGCCTTCTATATGGGTCGATGATGGATGATATCGGCATTGATCTACCAAAAGCACCAAGCAATTTCGGTGAGATTCTCGGGAAGTTAATTTTGATCAGAGGTCTGGATTTCGCTGTTGTGAAGGAGATTCTTAAGAAGGTGGAAGATAACTACTTGCAAAAATCCATTTTTGGTGGTGCTATGAAGATCCTCAACTCTAGCCCTTCTGGAGAAGGAATTCTGGCAACTCAAAGCGTTGAGATCCAGGCATGTGAGACTTTACTTGCGTGA 2313 46.22 MQADQTVISLRPGGGGGFRGSRFVTPRFDSSSADSSSLRPHGGAASILKTGDLRFEGRERMQYTRDQLLQLREVATVPEDILKVKLEVESEIVGEDQTWARAESNQQSQSQGRYFEADNRDWRGRSGQLPGSTEEGSWEANKDLSGQSELRFQDSNNRNQVSGNQGVGTAPALIKAEVPWSVRRGNISDKERVLKTVKGILNKLTPEKFDILKGQLIDSGITSADILKDVISLIFEKAVFEPTFCPMYALLCSDLNEKLPSFPSEVPGEKDITFKRVLLNICQEAFEGADNMRAEIRQMTSPEQETERRDKERMVKLRTLGNIRLIGELLKQKMVPEKIVHHIVLELLGPDPKICPAEENVEAISQFFNTIGKQLDESPKSRRVNDVYFSRLKELTANTQLAPRLRFMVRDVLDLRANNWVPRREEVKAKTITEIHSEAEKNLGLRPGSMAMMRNGRNTEALGGLSPGGFPVARPGFGGMMPGMPGTRKMPGMPGLESDNWEVPRSRVMPRGETGGPIARGQSSLTGKTPSINSKYLPQGSGGVITGKTSALLQGSAAASPARPPSSMPGTQPVPHNPKPVAPVTPIISSPPKPVAPAASNLVDLRKKTVSLLEEYFSVRILDEALQCVEELKSPAYHPEVVKESLTIALEKIPPCVDPVVKLLEHLLHKNVLTEKDIGTGCLLYGSMMDDIGIDLPKAPSNFGEILGKLILIRGLDFAVVKEILKKVEDNYLQKSIFGGAMKILNSSPSGEGILATQSVEIQACETLLA 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26878398 26883535 - ClG42_05g0177400.10 Clacu05g1774 249521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g1774 770 Gene3D - 185 420 - -
Clacu05g1774 770 SMART if4_15 194 419 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Clacu05g1774 770 MobiDBLite consensus disorder prediction 99 115 - -
Clacu05g1774 770 SUPERFAMILY ARM repeat 601 756 IPR016024 -
Clacu05g1774 770 FunFam Eukaryotic translation initiation factor isoform 4G-2 185 420 - -
Clacu05g1774 770 Pfam MIF4G domain 194 419 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Clacu05g1774 770 Gene3D - 602 758 - -
Clacu05g1774 770 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 49 768 IPR045208 GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0016281(PANTHER)
Clacu05g1774 770 MobiDBLite consensus disorder prediction 519 538 - -
Clacu05g1774 770 SUPERFAMILY ARM repeat 187 422 IPR016024 -
Clacu05g1774 770 MobiDBLite consensus disorder prediction 1 44 - -
Clacu05g1774 770 ProSiteProfiles MI domain profile. 604 726 IPR003891 -
Clacu05g1774 770 SMART ma3_7 605 717 IPR003891 -
Clacu05g1774 770 MobiDBLite consensus disorder prediction 25 39 - -
Clacu05g1774 770 MobiDBLite consensus disorder prediction 509 538 - -
Clacu05g1774 770 MobiDBLite consensus disorder prediction 555 575 - -
Clacu05g1774 770 Pfam MA3 domain 605 716 IPR003891 -
Clacu05g1774 770 MobiDBLite consensus disorder prediction 99 142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1774 Clacu-Chr5:26878398 Clacu06g0861 Clacu-Chr6:10795839 2.90E-48 dispersed
Clacu05g1774 Clacu-Chr5:26878398 Clacu06g1345 Clacu-Chr6:24313698 2.30E-279 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g1774 K03260 - csv:101211356 1310.43